RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 MRPL44Q9H9J2 332 aaKnown RBP5.4□□□□□ -1.54
VPS13C-208ENST00000559119 TMEM8AQ9HCN3 771 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 VPS45Q9NRW7 570 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 COL20A1Q9P218 1284 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 SEMA5BQ9P283 1151 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 GTPBP1O00178 669 aaKnown RBP5.39□□□□□ -1.55
VPS13C-208ENST00000559119 ZC3H11AO75152 810 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS13C-208ENST00000559119 IL1R1P14778 569 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 COPAP53621 1224 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 CACNB3P54284 484 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 CXorf57Q6NSI4 855 aaKnown RBP5.39□□□□□ -1.55
VPS13C-208ENST00000559119 DLK2Q6UY11 383 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 ADHFE1Q8IWW8 467 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 ZDHHC12Q96GR4 267 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 CTAGE1Q96RT6 745 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 ZNF287Q9HBT7 754 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 C1orf112Q9NSG2 853 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 RGS17Q9UGC6 210 aaPredicted RBP5.39□□□□□ -1.55
VPS13C-208ENST00000559119 VPS51Q9UID3 782 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 COG5Q9UP83 839 aa5.39□□□□□ -1.55
VPS13C-208ENST00000559119 SLC22A23A1A5C7 686 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 ANKRD62A6NC57 917 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 PRSS44E7EML9 344 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 F8W810 466 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 CTIFO43310 598 aaKnown RBP5.38□□□□□ -1.55
VPS13C-208ENST00000559119 NDUFB8O95169 186 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 MAP4K4O95819 1239 aaPredicted RBP5.38□□□□□ -1.55
VPS13C-208ENST00000559119 RPS6KB1P23443 525 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 CARSP49589 748 aaKnown RBP5.38□□□□□ -1.55
VPS13C-208ENST00000559119 MTA1Q13330 715 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 DNASE1L3Q13609 305 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 ZNF585BQ52M93 769 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 MANEALQ5VSG8 457 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 GRHL2Q6ISB3 625 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 RFX8Q6ZV50 586 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 UNC13DQ70J99 1090 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 TFAP2DQ7Z6R9 452 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 SKAP1Q86WV1 359 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.38□□□□□ -1.55
VPS13C-208ENST00000559119 AGO4Q9HCK5 861 aaKnown RBP5.38□□□□□ -1.55
VPS13C-208ENST00000559119 HPSEQ9Y251 543 aa5.38□□□□□ -1.55
VPS13C-208ENST00000559119 WDR47O94967 919 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 FGF2P09038 288 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 HOXA7P31268 230 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-208ENST00000559119 CNGA3Q16281 694 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 MINDY4Q4G0A6 757 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 RBM44Q6ZP01 1051 aaKnown RBP5.37□□□□□ -1.55
VPS13C-208ENST00000559119 UEVLDQ8IX04 471 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 RBMXL3Q8N7X1 1067 aaKnown RBP5.37□□□□□ -1.55
VPS13C-208ENST00000559119 SLC44A5Q8NCS7 719 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 STAG1Q8WVM7 1258 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 LRTOMTQ8WZ04 291 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 PRR11Q96HE9 360 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-208ENST00000559119 TMEM204Q9BSN7 226 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 SAP30LQ9HAJ7 183 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 MLXIPLQ9NP71 852 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 NOB1Q9ULX3 412 aaKnown RBP5.37□□□□□ -1.55
VPS13C-208ENST00000559119 COL15A1P39059 1388 aa5.37□□□□□ -1.55
VPS13C-208ENST00000559119 TMEM272A0A1B0GTI8 110 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 ZNF814B7Z6K7 855 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 TLX3O43711 291 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-208ENST00000559119 EPN2O95208 641 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 MBPP02686 304 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-208ENST00000559119 ST6GAL1P15907 406 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 TFEBP19484 476 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 VPS41P49754 854 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 DGKQP52824 942 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 RAE1P78406 368 aaKnown RBP5.36□□□□□ -1.55
VPS13C-208ENST00000559119 RHDQ02161 417 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 POLD3Q15054 466 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-208ENST00000559119 RNF220Q5VTB9 566 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 KRTAP5-11Q6L8G4 156 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 SESTD1Q86VW0 696 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 ADGRF4Q8IZF3 695 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 TMEM199Q8N511 208 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 B4GALNT2Q8NHY0 566 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 ASB5Q8WWX0 329 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 SLCO5A1Q9H2Y9 848 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 PAPOLBQ9NRJ5 636 aaKnown RBP5.36□□□□□ -1.55
VPS13C-208ENST00000559119 MSRB1Q9NZV6 116 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 ZNF212Q9UDV6 495 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 CAPN11Q9UMQ6 739 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 VPS4AQ9UN37 437 aa5.36□□□□□ -1.55
VPS13C-208ENST00000559119 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-208ENST00000559119 EME2A4GXA9 379 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-208ENST00000559119 C16orf96A6NNT2 1141 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 TTC34A8MYJ7 566 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 SLC3A2P08195 630 aaKnown RBP5.35□□□□□ -1.55
VPS13C-208ENST00000559119 MYF5P13349 255 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 HTR7P34969 479 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 ZXDBP98169 803 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 PPATQ06203 517 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 ARHGAP29Q52LW3 1261 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 PPP4R4Q6NUP7 873 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 CCDC149Q6ZUS6 474 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 KRT78Q8N1N4 520 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 SDR16C5Q8N3Y7 309 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 MBD3L2Q8NHZ7 208 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-208ENST00000559119 P2RY11Q96G91 374 aa5.35□□□□□ -1.55
VPS13C-208ENST00000559119 APIPQ96GX9 242 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms