RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 FMR1NBQ8N0W7 255 aaPredicted RBP16.31■□□□□ 0.2
TPM1-211ENST00000558314 TTC39CQ8N584 583 aa16.31■□□□□ 0.2
TPM1-211ENST00000558314 UBA3Q8TBC4 463 aa16.31■□□□□ 0.2
TPM1-211ENST00000558314 IPO4Q8TEX9 1081 aaKnown RBP16.31■□□□□ 0.2
TPM1-211ENST00000558314 CDK5RAP1Q96SZ6 601 aaKnown RBP16.31■□□□□ 0.2
TPM1-211ENST00000558314 GTPBP2Q9BX10 602 aaKnown RBP16.31■□□□□ 0.2
TPM1-211ENST00000558314 ULBP1Q9BZM6 244 aa16.31■□□□□ 0.2
TPM1-211ENST00000558314 TMEM74BQ9NUR3 256 aa16.31■□□□□ 0.2
TPM1-211ENST00000558314 MARCH2Q9P0N8 246 aa16.31■□□□□ 0.2
TPM1-211ENST00000558314 HESX1Q9UBX0 185 aa16.31■□□□□ 0.2
TPM1-211ENST00000558314 TULP2O00295 520 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 AP5Z1O43299 807 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 KLKB1P03952 638 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 NDUFV2P19404 249 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 ATXN3P54252 364 aaPredicted RBP16.3■□□□□ 0.2
TPM1-211ENST00000558314 COG7P83436 770 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 ENPEPQ07075 957 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 BECN1Q14457 450 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 ST3GAL2Q16842 350 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 SGO2Q562F6 1265 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 KLHDC10Q6PID8 442 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 Q6ZNB5 142 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 SYT12Q8IV01 421 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 ARHGAP18Q8N392 663 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 KCNV2Q8TDN2 545 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 LRRC4Q9HBW1 653 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 MARK1Q9P0L2 795 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 USP3Q9Y6I4 520 aa16.3■□□□□ 0.2
TPM1-211ENST00000558314 MYO18AQ92614 2054 aaKnown RBP16.3■□□□□ 0.2
TPM1-211ENST00000558314 A0A1W2PQF6 199 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 PIK3R2O00459 728 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 SLC16A3O15427 465 aaKnown RBP16.29■□□□□ 0.2
TPM1-211ENST00000558314 TSPAN3O60637 253 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 NDUFS2O75306 463 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 KRT37O76014 449 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 ZBED1O96006 694 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 CYBBP04839 570 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 FKBP3Q00688 224 aaKnown RBP16.29■□□□□ 0.2
TPM1-211ENST00000558314 PDE4CQ08493 712 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 FOXC1Q12948 553 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 CUL2Q13617 745 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 CCDC40Q4G0X9 1142 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 KLHL10Q6JEL2 608 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 CACUL1Q86Y37 369 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 RGL4Q8IZJ4 473 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 ANKRD52Q8NB46 1076 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 DDI1Q8WTU0 396 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 RNF139Q8WU17 664 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 EDEM1Q92611 657 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 IPO9Q96P70 1041 aaKnown RBP16.29■□□□□ 0.2
TPM1-211ENST00000558314 DUSP9Q99956 384 aaKnown RBP16.29■□□□□ 0.2
TPM1-211ENST00000558314 DCLK3Q9C098 648 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 CD93Q9NPY3 652 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 CLIC5Q9NZA1 410 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 ARMCX3Q9UH62 379 aaPredicted RBP16.29■□□□□ 0.2
TPM1-211ENST00000558314 HOOK1Q9UJC3 728 aaKnown RBP16.29■□□□□ 0.2
TPM1-211ENST00000558314 TSPAN16Q9UKR8 245 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 AGO1Q9UL18 857 aaKnown RBP16.29■□□□□ 0.2
TPM1-211ENST00000558314 ZNF510Q9Y2H8 683 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 STARD13Q9Y3M8 1113 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 NUP205Q92621 2012 aa16.29■□□□□ 0.2
TPM1-211ENST00000558314 ACACBO00763 2458 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 CISD3P0C7P0 127 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 LCP1P13796 627 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 ENGP17813 658 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 CHKAP35790 457 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 YWHAEP62258 255 aaKnown RBP16.28■□□□□ 0.2
TPM1-211ENST00000558314 ARID5AQ03989 594 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 ZNF252P-AS1Q0IIN9 211 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 ADIGQ0VDE8 80 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 LMAN2Q12907 356 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 STIM1Q13586 685 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 STARD3Q14849 445 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 ARHGAP17Q68EM7 881 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 SLC36A4Q6YBV0 504 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 SIX6OS1Q8N1H7 587 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 DEFB124Q8NES8 71 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 P2RY11Q96G91 374 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 GSDMAQ96QA5 445 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 CIPCQ9C0C6 399 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 STON1Q9Y6Q2 735 aa16.28■□□□□ 0.2
TPM1-211ENST00000558314 GON4LQ3T8J9 2241 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 IGHV1OR15-9A0A0B4J2B8 117 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 CDX4O14627 284 aaPredicted RBP16.27■□□□□ 0.2
TPM1-211ENST00000558314 PMLP29590 882 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 RGS7P49802 495 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 BCAT1P54687 386 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 ZNF33AQ06730 810 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 BST2Q10589 180 aaKnown RBP16.27■□□□□ 0.2
TPM1-211ENST00000558314 GEN1Q17RS7 908 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 FYB2Q5VWT5 728 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 FMNL3Q8IVF7 1028 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 TRIML1Q8N9V2 468 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 UCMAQ8WVF2 138 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 HSPA12BQ96MM6 686 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 SFMBT1Q9UHJ3 866 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 PCDHB4Q9Y5E5 795 aa16.27■□□□□ 0.2
TPM1-211ENST00000558314 PSMA7O14818 248 aa16.26■□□□□ 0.19
TPM1-211ENST00000558314 XPO1O14980 1071 aaKnown RBP16.26■□□□□ 0.19
TPM1-211ENST00000558314 SYNCRIPO60506 623 aaKnown RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms