RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 M0QZQ0 153 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 AP4M1O00189 453 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 KIAA0355O15063 1070 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 NCAM2O15394 837 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 CA12O43570 354 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 PMPCBO75439 489 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 ONECUT2O95948 504 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 CKMT1AP12532 417 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 TPTEP56180 551 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 DEUP1Q05D60 604 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 BFSP2Q13515 415 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 ST3GAL2Q16842 350 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 NBPF8Q3BBV2 869 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 FBXO47Q5MNV8 452 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 TTC22Q5TAA0 569 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 FAM90A2PQ658T7 463 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 NFRKBQ6P4R8 1299 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 Q6ZWC4 215 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 RAB11FIP2Q7L804 512 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 PEG10Q86TG7 708 aaKnown RBP5.3□□□□□ -1.56
PRPF39-212ENST00000557477 TTC30AQ86WT1 665 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 CLASRPQ8N2M8 674 aaKnown RBP5.3□□□□□ -1.56
PRPF39-212ENST00000557477 SLC22A17Q8WUG5 538 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 WDR60Q8WVS4 1066 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 THAP4Q8WY91 577 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 TRAPPC9Q96Q05 1148 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 MECRQ9BV79 373 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 ZNF341Q9BYN7 854 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 ELAC1Q9H777 363 aaKnown RBP5.3□□□□□ -1.56
PRPF39-212ENST00000557477 CCNL1Q9UK58 526 aaPredicted RBP5.3□□□□□ -1.56
PRPF39-212ENST00000557477 LRRFIP2Q9Y608 721 aaKnown RBP5.3□□□□□ -1.56
PRPF39-212ENST00000557477 CFAP43Q8NDM7 1665 aa5.3□□□□□ -1.56
PRPF39-212ENST00000557477 SALL3Q9BXA9 1300 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 GOLGA3Q08378 1498 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 GXYLT2A0PJZ3 443 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 RRN3P2A6NIE6 340 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 M0QYT0 321 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 CTIFO43310 598 aaKnown RBP5.29□□□□□ -1.56
PRPF39-212ENST00000557477 NARSO43776 548 aaKnown RBP5.29□□□□□ -1.56
PRPF39-212ENST00000557477 URI1O94763 535 aaPredicted RBP5.29□□□□□ -1.56
PRPF39-212ENST00000557477 AGR2O95994 175 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 PYGLP06737 847 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 ELFN1P0C7U0 828 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 HKR1P10072 659 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 INSRRP14616 1297 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 CREB1P16220 341 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 GSTM5P46439 218 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 SEC24CP53992 1094 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 BLOC1S1P78537 153 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 PSG6Q00889 435 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 KCNJ12Q14500 433 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 ADCK5Q3MIX3 580 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 LCE5AQ5TCM9 118 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 KAZNQ674X7 775 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 CCDC144NLQ6NUI1 221 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 TRABD2AQ86V40 505 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 RAB11FIP4Q86YS3 637 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 C2CD5Q86YS7 1000 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 P3H2Q8IVL5 708 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 HERC6Q8IVU3 1022 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 AFG1LQ8WV93 481 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 LINC00476Q8WZB0 136 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 C3orf49Q96BT1 292 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 PRR11Q96HE9 360 aaPredicted RBP5.29□□□□□ -1.56
PRPF39-212ENST00000557477 EIF2AK1Q9BQI3 630 aaKnown RBP5.29□□□□□ -1.56
PRPF39-212ENST00000557477 BRD8Q9H0E9 1235 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 ARHGEF3Q9NR81 526 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 VPS45Q9NRW7 570 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 DLL3Q9NYJ7 618 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 C19orf53Q9UNZ5 99 aaPredicted RBP5.29□□□□□ -1.56
PRPF39-212ENST00000557477 PCDHB7Q9Y5E2 793 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 DISP3Q9P2K9 1392 aa5.29□□□□□ -1.56
PRPF39-212ENST00000557477 DISP1Q96F81 1524 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 RAPGEF2Q9Y4G8 1499 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 GRID2IPA4D2P6 1211 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 LINC00473A8K010 186 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 NPIPB8E9PQR5 432 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 CES2O00748 559 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 SH3BP5O60239 455 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 ZNF202O95125 648 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 PRKCBP05771 671 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 CYP21A2P08686 494 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 ALADP13716 330 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 ENGP17813 658 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 TGM1P22735 817 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 MPLP40238 635 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 KRTAP10-2P60368 255 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 SF3A3Q12874 501 aaKnown RBP eCLIP5.28□□□□□ -1.569e-11■□□□□ 9.8
PRPF39-212ENST00000557477 FOXI1Q12951 378 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 TAF12Q16514 161 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 GALNTL6Q49A17 601 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 USP51Q70EK9 711 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 ZNF551Q7Z340 670 aaPredicted RBP5.28□□□□□ -1.56
PRPF39-212ENST00000557477 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.28□□□□□ -1.56
PRPF39-212ENST00000557477 BEND2Q8NDZ0 799 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 OR6Y1Q8NGX8 325 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 ACTRT2Q8TDY3 377 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 HMGB4Q8WW32 186 aa5.28□□□□□ -1.56
PRPF39-212ENST00000557477 LENG8Q96PV6 779 aaPredicted RBP5.28□□□□□ -1.56
PRPF39-212ENST00000557477 EIF3CQ99613 913 aaKnown RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms