RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 I6L893 689 aaPredicted RBP10.62□□□□□ -0.71
SRP54-208ENST00000555557 TLR5O60602 858 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 TADA3O75528 432 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 RALAP11233 206 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 KDELR1P24390 212 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 GTF2F1P35269 517 aaKnown RBP eCLIP10.62□□□□□ -0.71
SRP54-208ENST00000555557 PAFAH1B1P43034 410 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 CDH6P55285 790 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 ADCY2Q08462 1091 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 MMRN1Q13201 1228 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 KCTD19Q17RG1 926 aaPredicted RBP10.62□□□□□ -0.71
SRP54-208ENST00000555557 LONRF2Q1L5Z9 754 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 BOLA3Q53S33 107 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 ODF2Q5BJF6 829 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 PPM1LQ5SGD2 360 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 C10orf120Q5SQS8 335 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 ERMARDQ5T6L9 678 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 SEL1L2Q5TEA6 688 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 TMEM150AQ86TG1 271 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 MIB1Q86YT6 1006 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 RCOR2Q8IZ40 523 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 ZDHHC14Q8IZN3 488 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 CMASQ8NFW8 434 aaPredicted RBP10.62□□□□□ -0.71
SRP54-208ENST00000555557 EXD1Q8NHP7 514 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 ACTRT1Q8TDG2 376 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 RNF34Q969K3 372 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 PGAP3Q96FM1 320 aaPredicted RBP10.62□□□□□ -0.71
SRP54-208ENST00000555557 TRIM62Q9BVG3 475 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 WDCPQ9H6R7 721 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 DDX56Q9NY93 547 aaKnown RBP10.62□□□□□ -0.71
SRP54-208ENST00000555557 RRN3Q9NYV6 651 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 CLIC5Q9NZA1 410 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 HCFC2Q9Y5Z7 792 aa10.62□□□□□ -0.71
SRP54-208ENST00000555557 MYO9BQ13459 2157 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 C2orf78A6NCI8 922 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 PGRMC1O00264 195 aaKnown RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 NRG2O14511 850 aaPredicted RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 IRAK2O43187 625 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 SLU7O95391 586 aaKnown RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 IGLV3-25P01717 112 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 NRIP1P48552 1158 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 PSEN1P49768 467 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 C2orf54Q08AI8 447 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 EIF4EBP2Q13542 120 aaPredicted RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 PPP6R3Q5H9R7 873 aaPredicted RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 PDE12Q6L8Q7 609 aaKnown RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 ITIH5Q86UX2 942 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 SLC13A5Q86YT5 568 aaPredicted RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 MNS1Q8NEH6 495 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 TRMT2BQ96GJ1 504 aaKnown RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 CALN1Q9BXU9 219 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 TKTL2Q9H0I9 626 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 SMOC2Q9H3U7 446 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 DHX35Q9H5Z1 703 aaKnown RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 TLE6Q9H808 572 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 IL21Q9HBE4 155 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 HCFC1R1Q9NWW0 138 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 TRPM5Q9NZQ8 1165 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.61□□□□□ -0.71
SRP54-208ENST00000555557 FZD10Q9ULW2 581 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 AP4E1Q9UPM8 1137 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 SNX10Q9Y5X0 201 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 V9GYY5 206 aaPredicted RBP10.61□□□□□ -0.71
SRP54-208ENST00000555557 PLXNA3P51805 1871 aa10.61□□□□□ -0.71
SRP54-208ENST00000555557 CTAGE15A4D2H0 777 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 F9P00740 461 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 F11P03951 625 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 HMBSP08397 361 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 CTAGE8P0CG41 777 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 GJA1P17302 382 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 L1CAMP32004 1257 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 GBP1P32455 592 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 ADRA1BP35368 520 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 GGCXP38435 758 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 CDKN2BP42772 138 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 CXCR3P49682 368 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 ARSEP51690 589 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 SMAD3P84022 425 aaKnown RBP10.6□□□□□ -0.71
SRP54-208ENST00000555557 CKAP4Q07065 602 aaKnown RBP10.6□□□□□ -0.71
SRP54-208ENST00000555557 KRT81Q14533 505 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 SPOCD1Q6ZMY3 1216 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 GAREM2Q75VX8 874 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 SND1Q7KZF4 910 aaKnown RBP eCLIP10.6□□□□□ -0.718e-6■□□□□ 9.2
SRP54-208ENST00000555557 CTAGE6Q86UF2 777 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 CTAGE4Q8IX94 777 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 CEP112Q8N8E3 955 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 SPATA4Q8NEY3 305 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 TEKT4Q8WW24 435 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 RBM41Q96IZ5 413 aaKnown RBP10.6□□□□□ -0.71
SRP54-208ENST00000555557 NCAPGQ9BPX3 1015 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 CORO1BQ9BR76 489 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 LRRC3Q9BY71 257 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 OSBPL8Q9BZF1 889 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 RNF38Q9H0F5 515 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 IGFLR1Q9H665 355 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 RBM12Q9NTZ6 932 aaKnown RBP10.6□□□□□ -0.71
SRP54-208ENST00000555557 MTMR10Q9NXD2 777 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 RNF14Q9UBS8 474 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 RASAL2Q9UJF2 1139 aa10.6□□□□□ -0.71
SRP54-208ENST00000555557 TTC7AQ9ULT0 858 aaPredicted RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms