RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 OR1N1Q8NGS0 311 aa6.15□□□□□ -1.42
VRK1-205ENST00000555402 MBD3L2Q8NHZ7 208 aaPredicted RBP6.15□□□□□ -1.42
VRK1-205ENST00000555402 ZDHHC12Q96GR4 267 aa6.15□□□□□ -1.42
VRK1-205ENST00000555402 TBATAQ96M53 351 aa6.15□□□□□ -1.42
VRK1-205ENST00000555402 EIF2AK1Q9BQI3 630 aaKnown RBP6.15□□□□□ -1.42
VRK1-205ENST00000555402 MAF1Q9H063 256 aa6.15□□□□□ -1.42
VRK1-205ENST00000555402 BRD8Q9H0E9 1235 aa6.15□□□□□ -1.42
VRK1-205ENST00000555402 TP63Q9H3D4 680 aaPredicted RBP6.15□□□□□ -1.42
VRK1-205ENST00000555402 TAF1DQ9H5J8 278 aaPredicted RBP6.15□□□□□ -1.42
VRK1-205ENST00000555402 LPAR3Q9UBY5 353 aa6.15□□□□□ -1.42
VRK1-205ENST00000555402 PNMA2Q9UL42 364 aa6.15□□□□□ -1.42
VRK1-205ENST00000555402 RRN3P2A6NIE6 340 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 ADM5C9JUS6 153 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 PRKCGP05129 697 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 KLRK1P26718 216 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 ITPKBP27987 946 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 RBL1P28749 1068 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 FOLR3P41439 243 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 SP2Q02086 613 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 LY6KQ17RY6 165 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 SLC4A8Q2Y0W8 1093 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 SLC44A2Q8IWA5 706 aaPredicted RBP6.14□□□□□ -1.43
VRK1-205ENST00000555402 FTSJ3Q8IY81 847 aaKnown RBP6.14□□□□□ -1.43
VRK1-205ENST00000555402 TOR1AIP2Q8NFQ8 470 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 SCAMP5Q8TAC9 235 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 WDR60Q8WVS4 1066 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 PABPC3Q9H361 631 aaKnown RBP6.14□□□□□ -1.43
VRK1-205ENST00000555402 GLOD4Q9HC38 313 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 VPS51Q9UID3 782 aa6.14□□□□□ -1.43
VRK1-205ENST00000555402 OR2W5A6NFC9 320 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 AGPSO00116 658 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 PSMD9O00233 223 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 NCAM2O15394 837 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 VNN1O95497 513 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 CST5P28325 142 aaPredicted RBP6.13□□□□□ -1.43
VRK1-205ENST00000555402 SSBP2P81877 361 aaPredicted RBP6.13□□□□□ -1.43
VRK1-205ENST00000555402 GRM4Q14833 912 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 RPS6KA2Q15349 733 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 BTBD16Q32M84 506 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 KIAA0895LQ68EN5 471 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 SLC9A4Q6AI14 798 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 C11orf87Q6NUJ2 197 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 LVRNQ6Q4G3 990 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 RRAGAQ7L523 313 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 C2CD5Q86YS7 1000 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 CLASRPQ8N2M8 674 aaKnown RBP6.13□□□□□ -1.43
VRK1-205ENST00000555402 TEX19Q8NA77 164 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 AFG1LQ8WV93 481 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 GLG1Q92896 1179 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 C3orf49Q96BT1 292 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 TRAPPC9Q96Q05 1148 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 PYM1Q9BRP8 204 aaKnown RBP6.13□□□□□ -1.43
VRK1-205ENST00000555402 VN1R3Q9BXE9 311 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 PRDM8Q9NQV8 689 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 DRG1Q9Y295 367 aaKnown RBP6.13□□□□□ -1.43
VRK1-205ENST00000555402 SLC27A6Q9Y2P4 619 aa6.13□□□□□ -1.43
VRK1-205ENST00000555402 ZNF804BA4D1E1 1349 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 EXOC5O00471 708 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 BMP15O95972 392 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 IGKV2-30P06310 120 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 CD19P15391 556 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 PTGER1P34995 402 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 AARSP49588 968 aaKnown RBP eCLIP6.12□□□□□ -1.43
VRK1-205ENST00000555402 HNRNPMP52272 730 aaKnown RBP eCLIP6.12□□□□□ -1.43
VRK1-205ENST00000555402 PRKAA2P54646 552 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 TIAL1Q01085 375 aaKnown RBP eCLIP6.12□□□□□ -1.43
VRK1-205ENST00000555402 ITIH3Q06033 890 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 CUL4BQ13620 913 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 CSHL1Q14406 222 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 SF3B3Q15393 1217 aaKnown RBP6.12□□□□□ -1.43
VRK1-205ENST00000555402 FBXO47Q5MNV8 452 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 JAKMIP3Q5VZ66 844 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 RAB11FIP2Q7L804 512 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 SSH3Q8TE77 659 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 LPIN2Q92539 896 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 RSC1A1Q92681 617 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 USP13Q92995 863 aaPredicted RBP6.12□□□□□ -1.43
VRK1-205ENST00000555402 RILPL2Q969X0 211 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 HAPLN3Q96S86 360 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 EIF3CQ99613 913 aaKnown RBP6.12□□□□□ -1.43
VRK1-205ENST00000555402 ELAC1Q9H777 363 aaKnown RBP6.12□□□□□ -1.43
VRK1-205ENST00000555402 NKX1-2Q9UD57 310 aaPredicted RBP6.12□□□□□ -1.43
VRK1-205ENST00000555402 STEAP1Q9UHE8 339 aa6.12□□□□□ -1.43
VRK1-205ENST00000555402 FER1L4A9Z1Z3 1794 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 AOX1Q06278 1338 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 A1L4Q6 167 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 TP73O15350 636 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 ORC4O43929 436 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 PPP6R2O75170 966 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 TAF5LO75529 589 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 CNTFP26441 200 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 ADD2P35612 726 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 LIPAP38571 399 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 PAPOLAP51003 745 aaKnown RBP6.11□□□□□ -1.43
VRK1-205ENST00000555402 PNLIPRP1P54315 467 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 TIRAPP58753 221 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 TBCCQ15814 346 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 MTX3Q5HYI7 312 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 DTX2Q86UW9 622 aa6.11□□□□□ -1.43
VRK1-205ENST00000555402 CAND1Q86VP6 1230 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms