RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 UBE2Q2Q8WVN8 375 aa5.87□□□□□ -1.47
SCFD1-211ENST00000554437 PMM1Q92871 262 aa5.87□□□□□ -1.47
SCFD1-211ENST00000554437 EDC3Q96F86 508 aaKnown RBP5.87□□□□□ -1.47
SCFD1-211ENST00000554437 FYTTD1Q96QD9 318 aaKnown RBP5.87□□□□□ -1.47
SCFD1-211ENST00000554437 SAP30LQ9HAJ7 183 aa5.87□□□□□ -1.47
SCFD1-211ENST00000554437 TMEM8AQ9HCN3 771 aa5.87□□□□□ -1.47
SCFD1-211ENST00000554437 OBP2BQ9NPH6 170 aa5.87□□□□□ -1.47
SCFD1-211ENST00000554437 VPS45Q9NRW7 570 aa5.87□□□□□ -1.47
SCFD1-211ENST00000554437 ARHGEF17Q96PE2 2063 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-211ENST00000554437 PNMA6EA0A0J9YXQ4 647 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 TCRBV5S1A1TA0A578 114 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 SKAP2O75563 359 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-211ENST00000554437 NTSR2O95665 410 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 TMIGD3P0DMS9 266 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-211ENST00000554437 NPPBP16860 134 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 GPC5P78333 572 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 CFHR3Q02985 330 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 ICA1Q05084 483 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 SEMA3BQ13214 749 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 SPARCL1Q14515 664 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 C4orf46Q504U0 113 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 TMEM63BQ5T3F8 832 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 C10orf62Q5T681 223 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-211ENST00000554437 DCDC5Q6ZRR9 648 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 PTF1AQ7RTS3 328 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 LINC01465Q8N7H1 131 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 SEMA6DQ8NFY4 1073 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 ASB2Q96Q27 587 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 PCDHB2Q9Y5E7 798 aa5.86□□□□□ -1.47
SCFD1-211ENST00000554437 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-211ENST00000554437 LGALS16A8MUM7 142 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 TISP43B9A030 160 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 BTBD19C9JJ37 291 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 CLIC1O00299 241 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 PCDH17O14917 1159 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 PRAMEF2O60811 474 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 PRKCGP05129 697 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 CD38P28907 300 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 GALNSP34059 522 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 ALDH18A1P54886 795 aaKnown RBP5.85□□□□□ -1.47
SCFD1-211ENST00000554437 TUBA4AP68366 448 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 TRIM14Q14142 442 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 CSHL1Q14406 222 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 MFSD13AQ14CX5 517 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 ELF2Q15723 593 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 PFKFB4Q16877 469 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 CERKLQ49MI3 558 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-211ENST00000554437 FAM90A2PQ658T7 463 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 CCDC144NLQ6NUI1 221 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 PIK3AP1Q6ZUJ8 805 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 GATAD2AQ86YP4 633 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 CLASRPQ8N2M8 674 aaKnown RBP5.85□□□□□ -1.47
SCFD1-211ENST00000554437 ENAHQ8N8S7 591 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-211ENST00000554437 STYXQ8WUJ0 223 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 OVCA2Q8WZ82 227 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 ZNF764Q96H86 408 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-211ENST00000554437 RITA1Q96K30 269 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 FSCN3Q9NQT6 498 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 VPS4AQ9UN37 437 aa5.85□□□□□ -1.47
SCFD1-211ENST00000554437 LINC01548A6NM66 108 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 PRRT4C9JH25 899 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 FYB1O15117 783 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 NPC1O15118 1278 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 ASNA1O43681 348 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 TAF5LO75529 589 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 ANXA6P08133 673 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 CHRM5P08912 532 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-211ENST00000554437 MMP8P22894 467 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 PDIA3P30101 505 aaKnown RBP5.84□□□□□ -1.47
SCFD1-211ENST00000554437 SLC10A2Q12908 348 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-211ENST00000554437 KCNB1Q14721 858 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 GRM4Q14833 912 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 ZACNQ401N2 412 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 VSTM1Q6UX27 236 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 ZNF782Q6ZMW2 699 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-211ENST00000554437 KRT27Q7Z3Y8 459 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 EXOC8Q8IYI6 725 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 ATG16L2Q8NAA4 619 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 FAM71BQ8TC56 605 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 ADGRE3Q9BY15 652 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 FZD4Q9ULV1 537 aa5.84□□□□□ -1.47
SCFD1-211ENST00000554437 H3BNC9 293 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 DHHO43323 396 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 DNPH1O43598 174 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 RBMXL2O75526 392 aaKnown RBP5.83□□□□□ -1.48
SCFD1-211ENST00000554437 TNFRSF6BO95407 300 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 ITGA5P08648 1049 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 ALADP13716 330 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 IGHMBP2P38935 993 aaKnown RBP5.83□□□□□ -1.48
SCFD1-211ENST00000554437 JAK3P52333 1124 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 RAE1P78406 368 aaKnown RBP5.83□□□□□ -1.48
SCFD1-211ENST00000554437 PTK2BQ14289 1009 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 LARS2Q15031 903 aaKnown RBP5.83□□□□□ -1.48
SCFD1-211ENST00000554437 TRIM71Q2Q1W2 868 aaKnown RBP5.83□□□□□ -1.48
SCFD1-211ENST00000554437 AWAT1Q58HT5 328 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 RINT1Q6NUQ1 792 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 DPY19L2P1Q6NXN4 242 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 SYCE2Q6PIF2 218 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 FBXO28Q9NVF7 368 aa5.83□□□□□ -1.48
SCFD1-211ENST00000554437 GAR1Q9NY12 217 aaKnown RBP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms