RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 AMPD2Q01433 879 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 PTK2Q05397 1052 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 SRSF5Q13243 272 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 PDCLQ13371 301 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 SYCP1Q15431 976 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 TRIP4Q15650 581 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 C2orf27AQ580R0 203 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 SYPL2Q5VXT5 272 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 MAMSTRQ6ZN01 415 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 TOGARAM2Q6ZUX3 1019 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 NOP9Q86U38 636 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 SCML4Q8N228 414 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 CCDC33Q8N5R6 958 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 C1orf131Q8NDD1 294 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 ADAM32Q8TC27 787 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 RNF139Q8WU17 664 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 NELL1Q92832 810 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 OTUB2Q96DC9 234 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 FAM81BQ96LP2 452 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 BBS2Q9BXC9 721 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 NLRC4Q9NPP4 1024 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 ARHGEF4Q9NR80 690 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 LSM7Q9UK45 103 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 HCN2Q9UL51 889 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 STRIP2Q9ULQ0 834 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 NAALADL1Q9UQQ1 740 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 MYO15AQ9UKN7 3530 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 DMDP11532 3685 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 FANCMQ8IYD8 2048 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 LRRC10BA6NIK2 292 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 PROB1E7EW31 1015 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 F8VZ95 297 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 TEX33O43247 280 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 TSPAN3O60637 253 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 GFPT2O94808 682 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 FBXO21O94952 628 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 ERBB2P04626 1255 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 TYRP14679 529 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 HNRNPLP14866 589 aaKnown RBP eCLIP12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 CDK11BP21127 795 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 GAD2Q05329 585 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 GOLGA8FQ08AF8 430 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 GOLGA8DPQ0D2H9 430 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 KLHL40Q2TBA0 621 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 ZNF528Q3MIS6 628 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 PTPN20Q4JDL3 420 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 MSANTD2Q6P1R3 559 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 TADA2BQ86TJ2 420 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 TMEM110Q86TL2 294 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 SYNPOQ8N3V7 929 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 USP33Q8TEY7 942 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 STK32AQ8WU08 396 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 SLC20A1Q8WUM9 679 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 IRGQQ8WZA9 623 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 DDX1Q92499 740 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 FAM149B1Q96BN6 582 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 HHIPQ96QV1 700 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 CDK5RAP1Q96SZ6 601 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 PNKPQ96T60 521 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 STK33Q9BYT3 514 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 ABCC13Q9NSE7 274 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 CLEC4EQ9ULY5 219 aa12.1□□□□□ -0.47
CCDC88C-208ENST00000554165 GOLGA6L7A0A1B0GV03 622 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 PRR23AA6NEV1 266 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 GFRA3O60609 400 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 GRAP2O75791 330 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 CISD3P0C7P0 127 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 NCAM1P13591 858 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 CYP11B1P15538 503 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 KRT9P35527 623 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 TIE1P35590 1138 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 ACADSBP45954 432 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 UBXN1Q04323 297 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 IQCB1Q15051 598 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 MEA1Q16626 185 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 C2CD6Q53TS8 623 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 FKBP15Q5T1M5 1219 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 ZBTB44Q8NCP5 570 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 DQX1Q8TE96 717 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 NKD2Q969F2 451 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 ERLEC1Q96DZ1 483 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 MYEOVQ96EZ4 313 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 PPP1R13BQ96KQ4 1090 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 LHX5Q9H2C1 402 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 OLA1Q9NTK5 396 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 DNAJC17Q9NVM6 304 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 ZSCAN32Q9NX65 697 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 MARK1Q9P0L2 795 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 PCDHGC3Q9UN70 934 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 USP34Q70CQ2 3546 aa12.09□□□□□ -0.47
CCDC88C-208ENST00000554165 ZNF292O60281 2723 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 TBC1D3BA6NDS4 549 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 PRRT4C9JH25 899 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 HRO43593 1189 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 CACNG3O60359 315 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 LILRB5O75023 590 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 PAPSS2O95340 614 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 KLF8O95600 359 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 IGLV3-27P01718 113 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 APODP05090 189 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms