RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 ROR1Q01973 937 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 SLMAPQ14BN4 828 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 LONRF1Q17RB8 773 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 FAXCQ5TGI0 409 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM72AQ5TYM5 149 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM72DQ6L9T8 149 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 ZNF771Q7L3S4 317 aaPredicted RBP13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 ARCQ7LC44 396 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 TMEM173Q86WV6 379 aaPredicted RBP13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM72BQ86X60 149 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 MAP7D3Q8IWC1 876 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 TP53INP2Q8IXH6 220 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 TTC9BQ8N6N2 239 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 TTC13Q8NBP0 860 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 NT5C3BQ969T7 300 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 EXOC4Q96A65 974 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM193BQ96PV7 902 aaPredicted RBP13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 SAGE1Q9NXZ1 904 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 ABI2Q9NYB9 513 aaPredicted RBP13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 NUDT5Q9UKK9 219 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 TPX2Q9ULW0 747 aaKnown RBP13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 TANC1Q9C0D5 1861 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 GOLGA6L10A6NI86 522 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 F5H423 210 aaPredicted RBP13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 CREB3O43889 395 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 RBL1P28749 1068 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 PRMT2P55345 433 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 DEUP1Q05D60 604 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 SLC9A4Q6AI14 798 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 STRADAQ7RTN6 431 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 GPR152Q8TDT2 470 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 CPT1BQ92523 772 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 CASD1Q96PB1 797 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 RBM15Q96T37 977 aaKnown RBP eCLIP13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 GPR62Q9BZJ7 368 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 CSNK1G1Q9HCP0 422 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 SAYSD1Q9NPB0 183 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 TMEM161AQ9NX61 479 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 CTNNAL1Q9UBT7 734 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 MICAL3Q7RTP6 2002 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 KCNN4O15554 427 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 SOAT2O75908 522 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 LTFP02788 710 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 NUDT17P0C025 328 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 DESP17661 470 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 BFSP2Q13515 415 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 TFDP2Q14188 446 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 ABI1Q8IZP0 508 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 PRCCQ92733 491 aaPredicted RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 ZNF670Q9BS34 389 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 PCDHB8Q9UN66 801 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 PCDHB7Q9Y5E2 793 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 TADA2AO75478 443 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 TMEM63AO94886 807 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 UPP2O95045 317 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 MNX1P50219 401 aaPredicted RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 IFI35P80217 286 aaPredicted RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 BASP1P80723 227 aaKnown RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 TRIM60Q495X7 471 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 MSS51Q4VC12 460 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 BNIPLQ7Z465 357 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 TMCO2Q7Z6W1 182 aaPredicted RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 SCN4BQ8IWT1 228 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 THEM5Q8N1Q8 247 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 FAF2Q96CS3 445 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 USP29Q9HBJ7 922 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 WDR6Q9NNW5 1121 aaKnown RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 DMAP1Q9NPF5 467 aaPredicted RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 CNGB3Q9NQW8 809 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 DDIT4Q9NX09 232 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 DSEQ9UL01 958 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 USP3Q9Y6I4 520 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 PIAS1O75925 651 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 NR1D1P20393 614 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 RDXP35241 583 aaKnown RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 GRIK1P39086 918 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 ARPP19P56211 112 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 MAGOHP61326 146 aaKnown RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 TSPY1Q01534 308 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 DMTNQ08495 405 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 CCDC38Q502W7 563 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 FNBP1LQ5T0N5 605 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 NCBP2-AS2Q69YL0 99 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 SPATA2LQ8IUW3 424 aaPredicted RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 ANKMY2Q8IV38 441 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 CCDC13Q8IYE1 715 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 ZCCHC9Q8N567 271 aaKnown RBP13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 FTHL17Q9BXU8 183 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 HIPK3Q9H422 1215 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 OGDHLQ9ULD0 1010 aa13.23□□□□□ -0.29
VIPAS39-206ENST00000553888 TTC4O95801 387 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 CAPN2P17655 700 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 SLC11A1P49279 550 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 GUCY1A3Q02108 690 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 DDR2Q16832 855 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM171A1Q5VUB5 890 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 BSPRYQ5W0U4 402 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 RNF217Q8TC41 542 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms