RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, human

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC88C-206	ENST00000553437	KDSR	Q06136	332 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	SRSF5	Q13243	272 aa	Known RBP	10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	DMC1	Q14565	340 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	ANO4	Q32M45	955 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	C2orf27A	Q580R0	203 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CDKAL1	Q5VV42	579 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	MSANTD2	Q6P1R3	559 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TPGS1	Q6ZTW0	290 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	C11orf57	Q6ZUT1	292 aa	Predicted RBP	10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	RSRC2	Q7L4I2	434 aa	Known RBP	10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	FMNL3	Q8IVF7	1028 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	WDTC1	Q8N5D0	677 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CAMKK1	Q8N5S9	505 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CCDC26	Q8TAB7	109 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	STK32A	Q8WU08	396 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	SLC4A5	Q9BY07	1137 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	DCLK3	Q9C098	648 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	ABCC13	Q9NSE7	274 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	OLA1	Q9NTK5	396 aa	Known RBP	10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	WDR35	Q9P2L0	1181 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	DEC1	Q9P2X7	70 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	SFMBT1	Q9UHJ3	866 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	FBXO10	Q9UK96	956 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	STRIP2	Q9ULQ0	834 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	SMG5	Q9UPR3	1016 aa	Known RBP	10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	SLC8A2	Q9UPR5	921 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	ZNF510	Q9Y2H8	683 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	ZNF292	O60281	2723 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CHD6	Q8TD26	2715 aa		10.75	□□□□□ -0.69
CCDC88C-206	ENST00000553437	GVINP1	Q7Z2Y8	2422 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	NEDD8-MDP1	E9PL57	170 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	FOXN3	O00409	490 aa	Predicted RBP	10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	GFRA2	O00451	464 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	THAP12	O43422	761 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	MED7	O43513	233 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	FBXO21	O94952	628 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	MBD3	O95983	291 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	PENK	P01210	267 aa	Predicted RBP	10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CISD3	P0C7P0	127 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	HNRNPL	P14866	589 aa	Known RBP eCLIP	10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	EEF1G	P26641	437 aa	Known RBP	10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	GNA15	P30679	374 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CNR2	P34972	360 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CLCN1	P35523	988 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	USP8	P40818	1118 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	MRPS21	P82921	87 aa	Known RBP	10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	KLHDC7A	Q5VTJ3	777 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	FYB2	Q5VWT5	728 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TMEM110	Q86TL2	294 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	DENND1C	Q8IV53	801 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	SCUBE3	Q8IX30	993 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	FAM217A	Q8IXS0	508 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	FAM71A	Q8IYT1	594 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	DCLK2	Q8N568	766 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CCDC33	Q8N5R6	958 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	IL17RC	Q8NAC3	791 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	RUBCN	Q92622	972 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	ACD	Q96AP0	544 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	PLD4	Q96BZ4	506 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	HHIP	Q96QV1	700 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	BBS2	Q9BXC9	721 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	NAA15	Q9BXJ9	866 aa	Known RBP	10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	MIS12	Q9H081	205 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	ANO10	Q9NW15	660 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	FANCL	Q9NW38	375 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TAB2	Q9NYJ8	693 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TMEM63C	Q9P1W3	806 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	MMP17	Q9ULZ9	603 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	HBS1L	Q9Y450	684 aa	Known RBP	10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	BAHCC1	Q9P281	2608 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	FAM186A	A6NE01	2351 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	NCOR2	Q9Y618	2525 aa		10.74	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TBC1D3B	A6NDS4	549 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	PRRT4	C9JH25	899 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	SGK1	O00141	431 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	PAPSS1	O43252	624 aa	Predicted RBP	10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	MSI1	O43347	362 aa	Known RBP	10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	ADAM23	O75077	832 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	APBB3	O95704	486 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	IGLV3-27	P01718	113 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	LTF	P02788	710 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	PNMA6A	P0CW24	399 aa	Predicted RBP	10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TIE1	P35590	1138 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CHKA	P35790	457 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	ACADSB	P45954	432 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	KRT31	Q15323	416 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CRY1	Q16526	586 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CCDC183	Q5T5S1	534 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	GRAMD4	Q6IC98	578 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	SASS6	Q6UVJ0	657 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TMEM92	Q6UXU6	159 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TOGARAM2	Q6ZUX3	1019 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	CPXM2	Q8N436	756 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	ALLC	Q8N6M5	410 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TERB1	Q8NA31	727 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	TXNDC5	Q8NBS9	432 aa	Known RBP	10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	KCNV2	Q8TDN2	545 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	RNF139	Q8WU17	664 aa		10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	XPO6	Q96QU8	1125 aa	Known RBP	10.73	□□□□□ -0.69
CCDC88C-206	ENST00000553437	LHX5	Q9H2C1	402 aa		10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 201.7 ms