RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 HOXB2P14652 356 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 HNRNPLP14866 589 aaKnown RBP eCLIP11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 HOXD12P35452 270 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 HARS2P49590 506 aaKnown RBP11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 PDE4CQ08493 712 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 MESP2Q0VG99 397 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 LMAN2Q12907 356 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 CNGA2Q16280 664 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 GOLGA7BQ2TAP0 167 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 PPM1JQ5JR12 505 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 STPG1Q5TH74 334 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 DAB2IPQ5VWQ8 1189 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 RNF43Q68DV7 783 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 SMYD5Q6GMV2 418 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 LCLAT1Q6UWP7 414 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 RABEPKQ7Z6M1 372 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 SIX6OS1Q8N1H7 587 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 CPXM2Q8N436 756 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 GOLGA1Q92805 767 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 WBP2Q969T9 261 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 FAM81BQ96LP2 452 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 GABRG3Q99928 467 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 IRX2Q9BZI1 471 aaPredicted RBP11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 CNGB3Q9NQW8 809 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 ABCC13Q9NSE7 274 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 EVLQ9UI08 416 aaPredicted RBP11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 RASAL2Q9UJF2 1139 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 MAN1B1Q9UKM7 699 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 CIZ1Q9ULV3 898 aaPredicted RBP11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 HBS1LQ9Y450 684 aaKnown RBP11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 DNAH14Q0VDD8 3507 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 ATG2BQ96BY7 2078 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 SLC12A8A0AV02 714 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 O00370 1275 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 TM4SF5O14894 197 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 MDM4O15151 490 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 LATS1O95835 1130 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 CORO1AP31146 461 aaKnown RBP11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 DHPSP49366 369 aaPredicted RBP11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 GCNT1Q02742 428 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 LRMPQ12912 555 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 MORC3Q14149 939 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 STARD3Q14849 445 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 EIF4HQ15056 248 aaKnown RBP11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 CCDC6Q16204 474 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 MAP7D1Q3KQU3 841 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 BSPRYQ5W0U4 402 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 TMEM270Q6UE05 265 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 SYT12Q8IV01 421 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 SFTPA1Q8IWL2 248 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 TRIML1Q8N9V2 468 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 CEP76Q8TAP6 659 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 NELFBQ8WX92 580 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 IRGQQ8WZA9 623 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 ERCC4Q92889 916 aaPredicted RBP11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 HSFY1Q96LI6 401 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 LSM14BQ9BX40 385 aaKnown RBP11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 ULBP1Q9BZM6 244 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 AGO1Q9UL18 857 aaKnown RBP11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 INVSQ9Y283 1065 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 PCDHB4Q9Y5E5 795 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 SPTBN2O15020 2390 aa11.39□□□□□ -0.59
VTI1BP3-201ENST00000550220 DMXL1Q9Y485 3027 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 PPP1R3GB7ZBB8 358 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 SART1O43290 800 aaKnown RBP11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 FBXO21O94952 628 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 KLKB1P03952 638 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 HMBSP08397 361 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 PRKCSHP14314 528 aaPredicted RBP11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 BCKDHBP21953 392 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 MARSP56192 900 aaKnown RBP11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 ADIGQ0VDE8 80 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 PAK1Q13153 545 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 TRIP4Q15650 581 aaPredicted RBP11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 PKDCCQ504Y2 493 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 MPPE1Q53F39 396 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 FYB2Q5VWT5 728 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 LYSMD4Q5XG99 296 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 EGFLAMQ63HQ2 1017 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 ISM2Q6H9L7 571 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 KLHL10Q6JEL2 608 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 TTI2Q6NXR4 508 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 METTL3Q86U44 580 aaKnown RBP11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 DENND1CQ8IV53 801 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 UNC45BQ8IWX7 931 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 FAM217AQ8IXS0 508 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 PPM1KQ8N3J5 372 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 UBR7Q8N806 425 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 ZNF557Q8N988 423 aaPredicted RBP11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 EHBP1Q8NDI1 1231 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 IPO4Q8TEX9 1081 aaKnown RBP11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 DDI1Q8WTU0 396 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 PIGKQ92643 395 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 EDEM2Q9BV94 578 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 TRIM62Q9BVG3 475 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 NUSAP1Q9BXS6 441 aaKnown RBP11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 TMEM9BQ9NQ34 198 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 STOML2Q9UJZ1 356 aa11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.38□□□□□ -0.59
VTI1BP3-201ENST00000550220 HELZP42694 1942 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms