RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CELF5	Q8N6W0	485 aa	Known RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	SH3RF2	Q8TEC5	729 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	RFFL	Q8WZ73	363 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	USP13	Q92995	863 aa	Predicted RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	TRIM44	Q96DX7	344 aa	Predicted RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	BTBD6	Q96KE9	485 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	ASB16	Q96NS5	453 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	TBCB	Q99426	244 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	CNPY3	Q9BT09	278 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	KLF16	Q9BXK1	252 aa	Predicted RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	KCNF1	Q9H3M0	494 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	SMOC2	Q9H3U7	446 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZFP14	Q9HCL3	533 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	TDP1	Q9NUW8	608 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	CFAP97	Q9P2B7	532 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	IP6K2	Q9UHH9	426 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	LSM7	Q9UK45	103 aa	Known RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	ARHGAP26	Q9UNA1	814 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	UST	Q9Y2C2	406 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	TRANK1	O15050	2925 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	SZT2	Q5T011	3432 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	MACROD2	A1Z1Q3	448 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	LEFTY2	O00292	366 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	BUB1	O43683	1085 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	RNF8	O76064	485 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	PRAMEF12	O95522	483 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	OLFM2	O95897	454 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	F9	P00740	461 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	HARS2	P49590	506 aa	Known RBP	10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	PITX1	P78337	314 aa	Predicted RBP	10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	MESD	Q14696	234 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	TRIP4	Q15650	581 aa	Predicted RBP	10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	ZC3H12A	Q5D1E8	599 aa	Known RBP	10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	TANGO2	Q6ICL3	276 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	TRNP1	Q6NT89	227 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	CC2D1A	Q6P1N0	951 aa	Predicted RBP	10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	POTEH	Q6S545	545 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	MTSS1L	Q765P7	747 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	YAF2	Q8IY57	180 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	FAM172A	Q8WUF8	416 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	ATXN2L	Q8WWM7	1075 aa	Known RBP	10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	E2F7	Q96AV8	911 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	NPY6R	Q99463	290 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	KXD1	Q9BQD3	176 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	TSGA10	Q9BZW7	698 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	TRIM7	Q9C029	511 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	LACRT	Q9GZZ8	138 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	OSGEP	Q9NPF4	335 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	THG1L	Q9NWX6	298 aa	Known RBP	10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	EPS15L1	Q9UBC2	864 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	LIMD1	Q9UGP4	676 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	SLC12A6	Q9UHW9	1150 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	CCL26	Q9Y258	94 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	HBS1L	Q9Y450	684 aa	Known RBP	10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	PAXBP1	Q9Y5B6	917 aa		10.58	□□□□□ -0.72
CPSF7-221	ENST00000543545	PLXNA3	P51805	1871 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	RCCD1	A6NED2	376 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	HEPACAM2	A8MVW5	462 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	SCAMP3	O14828	347 aa	Known RBP	10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	IRAK2	O43187	625 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	CCP110	O43303	1012 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	ZSCAN12	O43309	604 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	KRT86	O43790	486 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	MOCS2	O96007	188 aa	Predicted RBP	10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	APOE	P02649	317 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	SLC2A3	P11169	496 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	TFE3	P19532	575 aa	Predicted RBP	10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	CCR1	P32246	355 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	RDX	P35241	583 aa	Known RBP	10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	PTPN9	P43378	593 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	OGDH	Q02218	1023 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	PIGH	Q14442	188 aa	Predicted RBP	10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	IFI16	Q16666	785 aa	Known RBP	10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	ARHGAP29	Q52LW3	1261 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	SH3PXD2A	Q5TCZ1	1133 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	PARM1	Q6UWI2	310 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	UNC45B	Q8IWX7	931 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	FNIP1	Q8TF40	1166 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	PLD4	Q96BZ4	506 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	ASB2	Q96Q27	587 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	DCLK3	Q9C098	648 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	WDCP	Q9H6R7	721 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	KIF9	Q9HAQ2	790 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	LZTFL1	Q9NQ48	299 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	TRMT1	Q9NXH9	659 aa	Known RBP	10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	LCMT1	Q9UIC8	334 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	GUCA1B	Q9UMX6	200 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	TLR6	Q9Y2C9	796 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	PPP2R2C	Q9Y2T4	447 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545	DUSP10	Q9Y6W6	482 aa		10.57	□□□□□ -0.72
CPSF7-221	ENST00000543545		A0A0A6YYK5	440 aa	Predicted RBP	10.56	□□□□□ -0.72
CPSF7-221	ENST00000543545		A0A0U1RQJ8	604 aa		10.56	□□□□□ -0.72
CPSF7-221	ENST00000543545	PJA2	O43164	708 aa		10.56	□□□□□ -0.72
CPSF7-221	ENST00000543545	ECI2	O75521	394 aa		10.56	□□□□□ -0.72
CPSF7-221	ENST00000543545	STC2	O76061	302 aa		10.56	□□□□□ -0.72
CPSF7-221	ENST00000543545	WEE1	P30291	646 aa		10.56	□□□□□ -0.72
CPSF7-221	ENST00000543545	CORO1A	P31146	461 aa	Known RBP	10.56	□□□□□ -0.72
CPSF7-221	ENST00000543545	ARHGAP25	P42331	645 aa		10.56	□□□□□ -0.72
CPSF7-221	ENST00000543545	SLC11A2	P49281	568 aa		10.56	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms