RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CSPG5O95196 566 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 GNA14O95837 355 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 KRT19P08727 400 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 JMJD7P0C870 316 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 IMPDH2P12268 514 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 RHCEP18577 417 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 OAS2P29728 719 aaKnown RBP5.44□□□□□ -1.54
CLIP1-217ENST00000543205 LRPAP1P30533 357 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 CA8P35219 290 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 CCT5P48643 541 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 AP3M2P53677 418 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 RHDQ02161 417 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 UBE3AQ05086 875 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 GTF2H3Q13889 308 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 MAP7Q14244 749 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 UPP1Q16831 310 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 SYDE1Q6ZW31 735 aaPredicted RBP5.44□□□□□ -1.54
CLIP1-217ENST00000543205 ACAD11Q709F0 780 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 DDX53Q86TM3 631 aaKnown RBP5.44□□□□□ -1.54
CLIP1-217ENST00000543205 EFCAB13Q8IY85 973 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 SPPL3Q8TCT6 385 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 STK35Q8TDR2 534 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 HASPINQ8TF76 798 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 USP7Q93009 1102 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 TBATAQ96M53 351 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 GUCD1Q96NT3 240 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 PAAF1Q9BRP4 392 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 LGR4Q9BXB1 951 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 EMILIN2Q9BXX0 1053 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 MTMR12Q9C0I1 747 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 NRSN2Q9GZP1 204 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 NAT10Q9H0A0 1025 aaKnown RBP5.44□□□□□ -1.54
CLIP1-217ENST00000543205 MRPL18Q9H0U6 180 aaKnown RBP5.44□□□□□ -1.54
CLIP1-217ENST00000543205 LMAN2LQ9H0V9 348 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 MRGBPQ9NV56 204 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 INTS13Q9NVM9 706 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 ADAM28Q9UKQ2 775 aa5.44□□□□□ -1.54
CLIP1-217ENST00000543205 FNDC1Q4ZHG4 1894 aaPredicted RBP5.44□□□□□ -1.54
CLIP1-217ENST00000543205 SF3B1O75533 1304 aaKnown RBP eCLIP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 LOC100289279A0A1B0GTE1 492 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 FAM86C2PA6NEL3 165 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 LRRIQ3A6PVS8 624 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 F8W810 466 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TMEM189-UBE2V1I3L0A0 370 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TPP1O14773 563 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 IKBKBO14920 756 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 GRM6O15303 877 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 GFPT2O94808 682 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 WISP1O95388 367 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ECEL1O95672 775 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 GSTP1P09211 210 aaKnown RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 PYGMP11217 842 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ARNTP27540 789 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 PLA2G5P39877 138 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 PNPLA4P41247 253 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 RBP5P82980 135 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ENPEPQ07075 957 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ELAVL2Q12926 359 aaKnown RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 BFSP1Q12934 665 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 MYO1EQ12965 1108 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TRPC3Q13507 836 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ZNF267Q14586 743 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ZSCAN23Q3MJ62 389 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 DCAF17Q5H9S7 520 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TCERG1LQ5VWI1 586 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 C9orf57Q5W0N0 161 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 SLC6A19Q695T7 634 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 KIAA1841Q6NSI8 718 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 FUT10Q6P4F1 479 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 FRMD5Q7Z6J6 570 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TMEM173Q86WV6 379 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 CEP57Q86XR8 500 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 FAM114A1Q8IWE2 563 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ZC3H3Q8IXZ2 948 aaKnown RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 AHI1Q8N157 1196 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 VPS52Q8N1B4 723 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 OR5B17Q8NGF7 314 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 BCL7CQ8WUZ0 217 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 KLHL6Q8WZ60 621 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 GOLGA1Q92805 767 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 FAM122AQ96E09 287 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ZNF560Q96MR9 790 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 CDX2Q99626 313 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ENTPD7Q9NQZ7 604 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TLR9Q9NR96 1032 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 MARCH5Q9NX47 278 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ARMCX3Q9UH62 379 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 FBXO10Q9UK96 956 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ITGA11Q9UKX5 1188 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 AGAP1Q9UPQ3 857 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 MAGED1Q9Y5V3 778 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 GBF1Q92538 1859 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 PIRO00625 290 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TLR5O60602 858 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 CXCL14O95715 111 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 SOD2P04179 222 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ITGB3P05106 788 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 URODP06132 367 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 CTSBP07858 339 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TRIM49P0CI25 452 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms