RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 HBS1LQ9Y450 684 aaKnown RBP17.87■□□□□ 0.45
LIG1-204ENST00000542460 TTC28Q96AY4 2481 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 DENND4AQ7Z401 1863 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 SLC12A8A0AV02 714 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 LOC730098B7Z3J9 87 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 TRUB2O95900 331 aaKnown RBP17.86■□□□□ 0.45
LIG1-204ENST00000542460 SDC4P31431 198 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 GBP1P32455 592 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 NNTQ13423 1086 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 TRNP1Q6NT89 227 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 DDX42Q86XP3 938 aaKnown RBP eCLIP17.86■□□□□ 0.45
LIG1-204ENST00000542460 ZFRQ96KR1 1074 aaKnown RBP17.86■□□□□ 0.45
LIG1-204ENST00000542460 UHRF1Q96T88 793 aaPredicted RBP17.86■□□□□ 0.45
LIG1-204ENST00000542460 NPY6RQ99463 290 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 NUP85Q9BW27 656 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 GKN1Q9NS71 199 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 TMEM51Q9NW97 253 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 OBP2AQ9NY56 170 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 UVRAGQ9P2Y5 699 aa17.86■□□□□ 0.45
LIG1-204ENST00000542460 ANHXE9PGG2 379 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 TNFRSF10AO00220 468 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 LEFTY2O00292 366 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 ECI2O75521 394 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 TCF3P15923 654 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 GPD1P21695 349 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 FCARP24071 287 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 VIPR2P41587 438 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 PTPN9P43378 593 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 SULT1E1P49888 294 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 ZNF143P52747 638 aaPredicted RBP17.85■□□□□ 0.45
LIG1-204ENST00000542460 ZXDBP98169 803 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 TANGO2Q6ICL3 276 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 PARM1Q6UWI2 310 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 TAC4Q86UU9 113 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 TXLNBQ8N3L3 684 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 ACRBPQ8NEB7 543 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 ADAM32Q8TC27 787 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 SH3RF2Q8TEC5 729 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 FGF14Q92915 247 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 NXPE3Q969Y0 559 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 ELSPBP1Q96BH3 223 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 CFAP57Q96MR6 1250 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 FAM204AQ9H8W3 233 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 CTTNBP2NLQ9P2B4 639 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 REXO2Q9Y3B8 237 aaKnown RBP17.85■□□□□ 0.45
LIG1-204ENST00000542460 OBSL1O75147 1896 aa17.85■□□□□ 0.45
LIG1-204ENST00000542460 C5orf42Q9H799 3197 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 M0QYT0 321 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 MSI1O43347 362 aaKnown RBP17.84■□□□□ 0.45
LIG1-204ENST00000542460 F9P00740 461 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 IGLV3-25P01717 112 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 PITX1P78337 314 aaPredicted RBP17.84■□□□□ 0.45
LIG1-204ENST00000542460 ZP2Q05996 745 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 HTR4Q13639 388 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 TRIP4Q15650 581 aaPredicted RBP17.84■□□□□ 0.45
LIG1-204ENST00000542460 CCDC14Q49A88 953 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 RHOT2Q8IXI1 618 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 FNIP1Q8TF40 1166 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 PGAP3Q96FM1 320 aaPredicted RBP17.84■□□□□ 0.45
LIG1-204ENST00000542460 TBCBQ99426 244 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 DESI2Q9BSY9 194 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 CNPY3Q9BT09 278 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 DDIT4Q9NX09 232 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 LIMD1Q9UGP4 676 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 TLR6Q9Y2C9 796 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 ANAPC1Q9H1A4 1944 aa17.84■□□□□ 0.45
LIG1-204ENST00000542460 HEPACAM2A8MVW5 462 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 IRAK2O43187 625 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 DESP17661 470 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 VAV2P52735 878 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 TBX4P57082 545 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 RING1Q06587 406 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 NME3Q13232 169 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 EIF4EBP2Q13542 120 aaPredicted RBP17.83■□□□□ 0.45
LIG1-204ENST00000542460 TCEAL1Q15170 157 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 ZNF77Q15935 545 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 KIAA1958Q8N8K9 716 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 SLC35G2Q8TBE7 412 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 ZNF564Q8TBZ8 553 aaPredicted RBP17.83■□□□□ 0.45
LIG1-204ENST00000542460 BPIFB1Q8TDL5 484 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 RFFLQ8WZ73 363 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 PLD4Q96BZ4 506 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 RSPRY1Q96DX4 576 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 KXD1Q9BQD3 176 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 CFAP97Q9P2B7 532 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 IGSF9Q9P2J2 1179 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 SH3BP1Q9Y3L3 701 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 ADGRG1Q9Y653 693 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 NUMBLQ9Y6R0 609 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 DENND4CQ5VZ89 1909 aa17.83■□□□□ 0.45
LIG1-204ENST00000542460 SYNJ2BP-COX16A0A087WUM0 186 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 E2F8A0AVK6 867 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 STC2O76061 302 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 ENDOD1O94919 500 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 HMBSP08397 361 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 IRF1P10914 325 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 TFE3P19532 575 aaPredicted RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 ATP11AP98196 1134 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 DEUP1Q05D60 604 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 USP4Q13107 963 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms