RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 AZIN2Q96A70 460 aa19.59■□□□□ 0.73
VPS33A-205ENST00000541169 LRRC3BQ96PB8 259 aa19.59■□□□□ 0.73
VPS33A-205ENST00000541169 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.59■□□□□ 0.73
VPS33A-205ENST00000541169 TTC28Q96AY4 2481 aa19.59■□□□□ 0.73
VPS33A-205ENST00000541169 SLC12A8A0AV02 714 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 STC2O76061 302 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 ADH1CP00326 375 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 SKILP12757 684 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 MAPK8IP2Q13387 824 aaPredicted RBP19.58■□□□□ 0.72
VPS33A-205ENST00000541169 SLC44A4Q53GD3 710 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 RALGPS2Q86X27 583 aaPredicted RBP19.58■□□□□ 0.72
VPS33A-205ENST00000541169 GPIHBP1Q8IV16 184 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 MCOLN2Q8IZK6 566 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 DQX1Q8TE96 717 aaKnown RBP19.58■□□□□ 0.72
VPS33A-205ENST00000541169 NELL2Q99435 816 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 DDX50Q9BQ39 737 aaKnown RBP19.58■□□□□ 0.72
VPS33A-205ENST00000541169 C11orf70Q9BRQ4 267 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.58■□□□□ 0.72
VPS33A-205ENST00000541169 C1QTNF1Q9BXJ1 281 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 ISCUQ9H1K1 167 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 DEF6Q9H4E7 631 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 TJP2Q9UDY2 1190 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 ADAMTS1Q9UHI8 967 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 NUDT5Q9UKK9 219 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 NAALADL1Q9UQQ1 740 aa19.58■□□□□ 0.72
VPS33A-205ENST00000541169 MRPS17Q9Y2R5 130 aaKnown RBP19.58■□□□□ 0.72
VPS33A-205ENST00000541169 DDX3XO00571 662 aaKnown RBP eCLIP19.57■□□□□ 0.72
VPS33A-205ENST00000541169 NARSO43776 548 aaKnown RBP19.57■□□□□ 0.72
VPS33A-205ENST00000541169 IGLV3-27P01718 113 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 KRT3P12035 628 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 SLC11A2P49281 568 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 PTP4A2Q12974 167 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 EML3Q32P44 896 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 SLC25A52Q3SY17 297 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 PREPLQ4J6C6 727 aaPredicted RBP19.57■□□□□ 0.72
VPS33A-205ENST00000541169 SND1Q7KZF4 910 aaKnown RBP eCLIP19.57■□□□□ 0.72
VPS33A-205ENST00000541169 ADGRG2Q8IZP9 1017 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 DEFB106AQ8N104 65 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 NT5C3BQ969T7 300 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 PGAP3Q96FM1 320 aaPredicted RBP19.57■□□□□ 0.72
VPS33A-205ENST00000541169 PANX2Q96RD6 677 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 SELENOOQ9BVL4 669 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 ARHGEF3Q9NR81 526 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 PARVAQ9NVD7 372 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 ARHGAP20Q9P2F6 1191 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 SLC12A6Q9UHW9 1150 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 TMEM59LQ9UK28 342 aa19.57■□□□□ 0.72
VPS33A-205ENST00000541169 SIGLEC16A6NMB1 481 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 DLL1O00548 723 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 ADCY5O95622 1261 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 TRUB2O95900 331 aaKnown RBP19.56■□□□□ 0.72
VPS33A-205ENST00000541169 IGLV3-25P01717 112 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 APOEP02649 317 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 FTLP02792 175 aaPredicted RBP19.56■□□□□ 0.72
VPS33A-205ENST00000541169 ADKP55263 362 aaKnown RBP19.56■□□□□ 0.72
VPS33A-205ENST00000541169 TBX4P57082 545 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 MLF2Q15773 248 aaPredicted RBP19.56■□□□□ 0.72
VPS33A-205ENST00000541169 SLC18A3Q16572 532 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 SYPL2Q5VXT5 272 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 Q6ZNB5 142 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 BMP8AQ7Z5Y6 402 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 TTC16Q8NEE8 873 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 KHSRPQ92945 711 aaKnown RBP eCLIP19.56■□□□□ 0.72
VPS33A-205ENST00000541169 CCDC42Q96M95 316 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 DDX23Q9BUQ8 820 aaKnown RBP19.56■□□□□ 0.72
VPS33A-205ENST00000541169 ECT2Q9H8V3 914 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 MRPL47Q9HD33 250 aaKnown RBP19.56■□□□□ 0.72
VPS33A-205ENST00000541169 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.56■□□□□ 0.72
VPS33A-205ENST00000541169 SFMBT1Q9UHJ3 866 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 SCINQ9Y6U3 715 aa19.56■□□□□ 0.72
VPS33A-205ENST00000541169 GOLGA6L3A6NEY3 463 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 MDM4O15151 490 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 IRAK2O43187 625 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 GREM1O60565 184 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 IRF1P10914 325 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 CORO1AP31146 461 aaKnown RBP19.55■□□□□ 0.72
VPS33A-205ENST00000541169 CCR1P32246 355 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 STARD6P59095 220 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 DNAJC24Q6P3W2 148 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 WDR59Q6PJI9 974 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 ZNF852Q6ZMS4 543 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 CPXM2Q8N436 756 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 ST13P5Q8NFI4 369 aaPredicted RBP19.55■□□□□ 0.72
VPS33A-205ENST00000541169 OSBPL6Q9BZF3 934 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 EBF3Q9H4W6 596 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 FAM204AQ9H8W3 233 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 STOML2Q9UJZ1 356 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 WNT6Q9Y6F9 365 aa19.55■□□□□ 0.72
VPS33A-205ENST00000541169 A0A0C4DFX4 3053 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 TMEM221A6NGB7 291 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 GOLGA8SH3BPF8 625 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 M0R296 226 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 AKR1B10O60218 316 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 SDC4P31431 198 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 PTPN9P43378 593 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 RNASE9P60153 205 aaKnown RBP19.54■□□□□ 0.72
VPS33A-205ENST00000541169 PPP2R5DQ14738 602 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 TAF5Q15542 800 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 BRMS1LQ5PSV4 323 aa19.54■□□□□ 0.72
VPS33A-205ENST00000541169 C10orf76Q5T2E6 689 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms