RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 GBP1P32455 592 aa8.8□□□□□ -1
CHD4-208ENST00000540960 EIF2S3P41091 472 aaKnown RBP8.8□□□□□ -1
CHD4-208ENST00000540960 VIPR2P41587 438 aa8.8□□□□□ -1
CHD4-208ENST00000540960 APBA1Q02410 837 aa8.8□□□□□ -1
CHD4-208ENST00000540960 CCINQ13939 588 aa8.8□□□□□ -1
CHD4-208ENST00000540960 PON2Q15165 354 aa8.8□□□□□ -1
CHD4-208ENST00000540960 AMHR2Q16671 573 aa8.8□□□□□ -1
CHD4-208ENST00000540960 CLEC16AQ2KHT3 1053 aa8.8□□□□□ -1
CHD4-208ENST00000540960 TRIM61Q5EBN2 209 aa8.8□□□□□ -1
CHD4-208ENST00000540960 DGKKQ5KSL6 1271 aa8.8□□□□□ -1
CHD4-208ENST00000540960 PPM1LQ5SGD2 360 aa8.8□□□□□ -1
CHD4-208ENST00000540960 TEX35Q5T0J7 233 aa8.8□□□□□ -1
CHD4-208ENST00000540960 PRSS55Q6UWB4 352 aaPredicted RBP8.8□□□□□ -1
CHD4-208ENST00000540960 GLB1LQ6UWU2 654 aa8.8□□□□□ -1
CHD4-208ENST00000540960 MMGT1Q8N4V1 131 aa8.8□□□□□ -1
CHD4-208ENST00000540960 LRRC52Q8N7C0 313 aa8.8□□□□□ -1
CHD4-208ENST00000540960 EIF1ADQ8N9N8 165 aaKnown RBP8.8□□□□□ -1
CHD4-208ENST00000540960 RBBP8NLQ8NC74 664 aaPredicted RBP8.8□□□□□ -1
CHD4-208ENST00000540960 OR2I1PQ8NGU4 316 aa8.8□□□□□ -1
CHD4-208ENST00000540960 SLC35G2Q8TBE7 412 aa8.8□□□□□ -1
CHD4-208ENST00000540960 ACTRT1Q8TDG2 376 aa8.8□□□□□ -1
CHD4-208ENST00000540960 ZNF516Q92618 1163 aa8.8□□□□□ -1
CHD4-208ENST00000540960 PIGKQ92643 395 aa8.8□□□□□ -1
CHD4-208ENST00000540960 ZSWIM3Q96MP5 696 aa8.8□□□□□ -1
CHD4-208ENST00000540960 HHIPQ96QV1 700 aa8.8□□□□□ -1
CHD4-208ENST00000540960 GPR62Q9BZJ7 368 aa8.8□□□□□ -1
CHD4-208ENST00000540960 TRIM4Q9C037 500 aa8.8□□□□□ -1
CHD4-208ENST00000540960 CARD9Q9H257 536 aa8.8□□□□□ -1
CHD4-208ENST00000540960 TRPV5Q9NQA5 729 aa8.8□□□□□ -1
CHD4-208ENST00000540960 TMEM74BQ9NUR3 256 aa8.8□□□□□ -1
CHD4-208ENST00000540960 SLC38A7Q9NVC3 462 aa8.8□□□□□ -1
CHD4-208ENST00000540960 WDR35Q9P2L0 1181 aa8.8□□□□□ -1
CHD4-208ENST00000540960 ANKMY1Q9P2S6 941 aa8.8□□□□□ -1
CHD4-208ENST00000540960 TRIM10Q9UDY6 481 aa8.8□□□□□ -1
CHD4-208ENST00000540960 FBXW11Q9UKB1 542 aa8.8□□□□□ -1
CHD4-208ENST00000540960 TTC7AQ9ULT0 858 aaPredicted RBP8.8□□□□□ -1
CHD4-208ENST00000540960 UBQLN1Q9UMX0 589 aaKnown RBP8.8□□□□□ -1
CHD4-208ENST00000540960 SSX2IPQ9Y2D8 614 aa8.8□□□□□ -1
CHD4-208ENST00000540960 MRPS23Q9Y3D9 190 aaKnown RBP8.8□□□□□ -1
CHD4-208ENST00000540960 MYH9P35579 1960 aaKnown RBP8.8□□□□□ -1
CHD4-208ENST00000540960 MYH11P35749 1972 aa8.79□□□□□ -1
CHD4-208ENST00000540960 CAPN8A6NHC0 703 aa8.79□□□□□ -1
CHD4-208ENST00000540960 ENO4A6NNW6 628 aa8.79□□□□□ -1
CHD4-208ENST00000540960 TMCO5BA8MYB1 307 aa8.79□□□□□ -1
CHD4-208ENST00000540960 PGRMC1O00264 195 aaKnown RBP8.79□□□□□ -1
CHD4-208ENST00000540960 ENC1O14682 589 aa8.79□□□□□ -1
CHD4-208ENST00000540960 ADAM12O43184 909 aa8.79□□□□□ -1
CHD4-208ENST00000540960 BUB1O43683 1085 aa8.79□□□□□ -1
CHD4-208ENST00000540960 RRP9O43818 475 aaKnown RBP8.79□□□□□ -1
CHD4-208ENST00000540960 C1RP00736 705 aa8.79□□□□□ -1
CHD4-208ENST00000540960 POMCP01189 267 aa8.79□□□□□ -1
CHD4-208ENST00000540960 HNRNPA1P09651 372 aaKnown RBP eCLIP8.79□□□□□ -1
CHD4-208ENST00000540960 CD59P13987 128 aa8.79□□□□□ -1
CHD4-208ENST00000540960 BCKDHBP21953 392 aa8.79□□□□□ -1
CHD4-208ENST00000540960 RAB27AP51159 221 aa8.79□□□□□ -1
CHD4-208ENST00000540960 LY6DQ14210 128 aa8.79□□□□□ -1
CHD4-208ENST00000540960 TRIP6Q15654 476 aaKnown RBP8.79□□□□□ -1
CHD4-208ENST00000540960 ERCC6LQ2NKX8 1250 aa8.79□□□□□ -1
CHD4-208ENST00000540960 WDR93Q6P2C0 686 aa8.79□□□□□ -1
CHD4-208ENST00000540960 TMEM270Q6UE05 265 aa8.79□□□□□ -1
CHD4-208ENST00000540960 MAATS1Q7Z4T9 603 aa8.79□□□□□ -1
CHD4-208ENST00000540960 NOP9Q86U38 636 aaKnown RBP8.79□□□□□ -1
CHD4-208ENST00000540960 PHF13Q86YI8 300 aaPredicted RBP8.79□□□□□ -1
CHD4-208ENST00000540960 LRRC57Q8N9N7 239 aa8.79□□□□□ -1
CHD4-208ENST00000540960 CCDC26Q8TAB7 109 aa8.79□□□□□ -1
CHD4-208ENST00000540960 LNX1Q8TBB1 728 aaPredicted RBP8.79□□□□□ -1
CHD4-208ENST00000540960 TATDN2Q93075 761 aa8.79□□□□□ -1
CHD4-208ENST00000540960 TCEAL4Q96EI5 215 aa8.79□□□□□ -1
CHD4-208ENST00000540960 ZNF560Q96MR9 790 aa8.79□□□□□ -1
CHD4-208ENST00000540960 MTMR12Q9C0I1 747 aa8.79□□□□□ -1
CHD4-208ENST00000540960 LHX5Q9H2C1 402 aa8.79□□□□□ -1
CHD4-208ENST00000540960 ZFP14Q9HCL3 533 aa8.79□□□□□ -1
CHD4-208ENST00000540960 UBN1Q9NPG3 1134 aa8.79□□□□□ -1
CHD4-208ENST00000540960 HOMER3Q9NSC5 361 aa8.79□□□□□ -1
CHD4-208ENST00000540960 PARVAQ9NVD7 372 aa8.79□□□□□ -1
CHD4-208ENST00000540960 GDE1Q9NZC3 331 aa8.79□□□□□ -1
CHD4-208ENST00000540960 NXF1Q9UBU9 619 aaKnown RBP8.79□□□□□ -1
CHD4-208ENST00000540960 STK39Q9UEW8 545 aa8.79□□□□□ -1
CHD4-208ENST00000540960 IL17BQ9UHF5 180 aa8.79□□□□□ -1
CHD4-208ENST00000540960 FEZ2Q9UHY8 353 aaPredicted RBP8.79□□□□□ -1
CHD4-208ENST00000540960 PCDHGC3Q9UN70 934 aa8.79□□□□□ -1
CHD4-208ENST00000540960 CAPN6Q9Y6Q1 641 aa8.79□□□□□ -1
CHD4-208ENST00000540960 DUSP10Q9Y6W6 482 aa8.79□□□□□ -1
CHD4-208ENST00000540960 HELZP42694 1942 aaKnown RBP8.78□□□□□ -1
CHD4-208ENST00000540960 ARID2Q68CP9 1835 aa8.78□□□□□ -1
CHD4-208ENST00000540960 CARNS1A5YM72 827 aa8.78□□□□□ -1
CHD4-208ENST00000540960 LACTBL1A8MY62 500 aa8.78□□□□□ -1
CHD4-208ENST00000540960 MYO1FO00160 1098 aa8.78□□□□□ -1
CHD4-208ENST00000540960 THAP12O43422 761 aa8.78□□□□□ -1
CHD4-208ENST00000540960 VNN1O95497 513 aa8.78□□□□□ -1
CHD4-208ENST00000540960 CYP1A1P04798 512 aaPredicted RBP8.78□□□□□ -1
CHD4-208ENST00000540960 KRT19P08727 400 aa8.78□□□□□ -1
CHD4-208ENST00000540960 GP1BBP13224 206 aa8.78□□□□□ -1
CHD4-208ENST00000540960 KCNE1P15382 129 aa8.78□□□□□ -1
CHD4-208ENST00000540960 PSMC3P17980 439 aa8.78□□□□□ -1
CHD4-208ENST00000540960 ACO1P21399 889 aaKnown RBP8.78□□□□□ -1
CHD4-208ENST00000540960 MAN1A1P33908 653 aa8.78□□□□□ -1
CHD4-208ENST00000540960 ZNF132P52740 706 aa8.78□□□□□ -1
CHD4-208ENST00000540960 FMO1Q01740 532 aa8.78□□□□□ -1
CHD4-208ENST00000540960 CENPCQ03188 943 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms