RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 FMNL3Q8IVF7 1028 aa14.85□□□□□ -0.03
USP28-209ENST00000540925 CCDC26Q8TAB7 109 aa14.85□□□□□ -0.03
USP28-209ENST00000540925 ATRIPQ8WXE1 791 aa14.85□□□□□ -0.03
USP28-209ENST00000540925 EDEM1Q92611 657 aa14.85□□□□□ -0.03
USP28-209ENST00000540925 PLD4Q96BZ4 506 aa14.85□□□□□ -0.03
USP28-209ENST00000540925 DCLK3Q9C098 648 aa14.85□□□□□ -0.03
USP28-209ENST00000540925 FANCLQ9NW38 375 aa14.85□□□□□ -0.03
USP28-209ENST00000540925 AGO1Q9UL18 857 aaKnown RBP14.85□□□□□ -0.03
USP28-209ENST00000540925 HCN2Q9UL51 889 aa14.85□□□□□ -0.03
USP28-209ENST00000540925 HBS1LQ9Y450 684 aaKnown RBP14.85□□□□□ -0.03
USP28-209ENST00000540925 SLC12A8A0AV02 714 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 LRRC10BA6NIK2 292 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 PIK3R2O00459 728 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 TRIM24O15164 1050 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 PAPSS1O43252 624 aaPredicted RBP14.84□□□□□ -0.03
USP28-209ENST00000540925 THAP12O43422 761 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 LTFP02788 710 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 PNMA6AP0CW24 399 aaPredicted RBP14.84□□□□□ -0.03
USP28-209ENST00000540925 TYRP14679 529 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 ZNF18P17022 549 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 TNFRSF4P43489 277 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 ACADSBP45954 432 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 FNTBP49356 437 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 MRPS21P82921 87 aaKnown RBP14.84□□□□□ -0.03
USP28-209ENST00000540925 FOXK2Q01167 660 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 FYB2Q5VWT5 728 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 SASS6Q6UVJ0 657 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 RSRC2Q7L4I2 434 aaKnown RBP14.84□□□□□ -0.03
USP28-209ENST00000540925 WDR5BQ86VZ2 330 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 LONP2Q86WA8 852 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 CPXM2Q8N436 756 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 ACDQ96AP0 544 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 LHX5Q9H2C1 402 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 PLCB1Q9NQ66 1216 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 ARHGEF4Q9NR80 690 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 TAB2Q9NYJ8 693 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 WDR35Q9P2L0 1181 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 SFMBT1Q9UHJ3 866 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 STRIP2Q9ULQ0 834 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 FHOD1Q9Y613 1164 aa14.84□□□□□ -0.03
USP28-209ENST00000540925 HRO43593 1189 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 APODP05090 189 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 HMBSP08397 361 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 CISD3P0C7P0 127 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 UCHL3P15374 230 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 MYL5Q02045 173 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 KDSRQ06136 332 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 TYRO3Q06418 890 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 PDCLQ13371 301 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 DMC1Q14565 340 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 ANO4Q32M45 955 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 HSF5Q4G112 596 aaPredicted RBP14.83□□□□□ -0.04
USP28-209ENST00000540925 SLC47A2Q86VL8 602 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 SCUBE3Q8IX30 993 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 CAMKK1Q8N5S9 505 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 NAT16Q8N8M0 369 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 TERB1Q8NA31 727 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 IL17RCQ8NAC3 791 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 BBS2Q9BXC9 721 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 GANQ9H2C0 597 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 DEC1Q9P2X7 70 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 EBF1Q9UH73 591 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 LIMA1Q9UHB6 759 aaKnown RBP14.83□□□□□ -0.04
USP28-209ENST00000540925 MMP17Q9ULZ9 603 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 SIK3Q9Y2K2 1263 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 STARD13Q9Y3M8 1113 aa14.83□□□□□ -0.04
USP28-209ENST00000540925 EML5Q05BV3 1969 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 E5RJQ4 531 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 NEDD8-MDP1E9PL57 170 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 SART1O43290 800 aaKnown RBP14.82□□□□□ -0.04
USP28-209ENST00000540925 MSI1O43347 362 aaKnown RBP14.82□□□□□ -0.04
USP28-209ENST00000540925 ADAM23O75077 832 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 LATS1O95835 1130 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 HNRNPLP14866 589 aaKnown RBP eCLIP14.82□□□□□ -0.04
USP28-209ENST00000540925 CNR2P34972 360 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 CHKAP35790 457 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 USP8P40818 1118 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 PTK2Q05397 1052 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 EIF4EBP2Q13542 120 aaPredicted RBP14.82□□□□□ -0.04
USP28-209ENST00000540925 DRAP1Q14919 205 aaPredicted RBP14.82□□□□□ -0.04
USP28-209ENST00000540925 C2orf27AQ580R0 203 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 EMC10Q5UCC4 262 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 RNF43Q68DV7 783 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 TPGS1Q6ZTW0 290 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 DENND1CQ8IV53 801 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 KCNV2Q8TDN2 545 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 RNF139Q8WU17 664 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 DDX1Q92499 740 aaKnown RBP14.82□□□□□ -0.04
USP28-209ENST00000540925 PIWIL1Q96J94 861 aaKnown RBP14.82□□□□□ -0.04
USP28-209ENST00000540925 CPXM1Q96SM3 734 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 MIS12Q9H081 205 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 TJP2Q9UDY2 1190 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 SMG5Q9UPR3 1016 aaKnown RBP14.82□□□□□ -0.04
USP28-209ENST00000540925 SLC8A2Q9UPR5 921 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 DNAH14Q0VDD8 3507 aa14.82□□□□□ -0.04
USP28-209ENST00000540925 LAMA1P25391 3075 aa14.81□□□□□ -0.04
USP28-209ENST00000540925 F8VZ95 297 aa14.81□□□□□ -0.04
USP28-209ENST00000540925 EPHB6O15197 1021 aa14.81□□□□□ -0.04
USP28-209ENST00000540925 IGLV3-25P01717 112 aa14.81□□□□□ -0.04
USP28-209ENST00000540925 CDH5P33151 784 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms