RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SERPINB12Q96P63 405 aa14.52□□□□□ -0.08
USP3-204ENST00000540797 PRPF18Q99633 342 aaKnown RBP14.52□□□□□ -0.08
USP3-204ENST00000540797 YY1AP1Q9H869 796 aa14.52□□□□□ -0.08
USP3-204ENST00000540797 SPASTQ9UBP0 616 aa14.52□□□□□ -0.08
USP3-204ENST00000540797 SCOCQ9UIL1 159 aa14.52□□□□□ -0.08
USP3-204ENST00000540797 SMIM35A0A1B0GVV1 85 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 TLL1O43897 1013 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 IGSF6O95976 241 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 PAX3P23760 479 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 TERF2Q15554 542 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 FNDC3BQ53EP0 1204 aaKnown RBP14.52□□□□□ -0.09
USP3-204ENST00000540797 DENND1BQ6P3S1 775 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 TPGS1Q6ZTW0 290 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 DSG4Q86SJ6 1040 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 NT5DC3Q86UY8 548 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 C3orf20Q8ND61 904 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 VPS37AQ8NEZ2 397 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 C18orf25Q96B23 403 aaPredicted RBP14.52□□□□□ -0.09
USP3-204ENST00000540797 FUCA2Q9BTY2 467 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 AVENQ9NQS1 362 aaPredicted RBP14.52□□□□□ -0.09
USP3-204ENST00000540797 SPG21Q9NZD8 308 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 VANGL2Q9ULK5 521 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 RUVBL2Q9Y230 463 aaKnown RBP14.52□□□□□ -0.09
USP3-204ENST00000540797 C2CD2Q9Y426 696 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 COL1A2P08123 1366 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 SIGLEC1Q9BZZ2 1709 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 COL14A1Q05707 1796 aaKnown RBP14.52□□□□□ -0.09
USP3-204ENST00000540797 DDX3XO00571 662 aaKnown RBP eCLIP14.52□□□□□ -0.096e-9■■■■□ 22.1
USP3-204ENST00000540797 SUPT7LO94864 414 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 SPATA31C1P0DKV0 1188 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 NPR3P17342 541 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 DDX39BQ13838 428 aaKnown RBP14.52□□□□□ -0.09
USP3-204ENST00000540797 HIC1Q14526 733 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 WDR59Q6PJI9 974 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 TRIML2Q8N7C3 387 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 MANSC1Q9H8J5 431 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 ASAH2Q9NR71 780 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 NCF1BA6NI72 391 aaPredicted RBP14.52□□□□□ -0.09
USP3-204ENST00000540797 NCF1CA8MVU1 366 aaPredicted RBP14.52□□□□□ -0.09
USP3-204ENST00000540797 ADH1AP07327 375 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 SNHG28P0DPA3 235 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 NCF1P14598 390 aaPredicted RBP14.52□□□□□ -0.09
USP3-204ENST00000540797 PPM1AP35813 382 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 RTP1P59025 263 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 CNGA2Q16280 664 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 DCLRE1AQ6PJP8 1040 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 NYAP1Q6ZVC0 841 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 SLAIN1Q8ND83 568 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 FAM105AQ9NUU6 356 aa14.52□□□□□ -0.09
USP3-204ENST00000540797 ASTN1O14525 1302 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 TRAV19A0A0A6YYK7 116 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 ZSCAN9O15535 394 aaPredicted RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 GLRA3O75311 464 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 MIPP30301 263 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 GRIK3Q13003 919 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 HECTD3Q5T447 861 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 ABHD15Q6UXT9 468 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 PTAR1Q7Z6K3 402 aaPredicted RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 PCYOX1LQ8NBM8 494 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 CORO1BQ9BR76 489 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 PABPC3Q9H361 631 aaKnown RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 CHCHD3Q9NX63 227 aaKnown RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 LNPEPQ9UIQ6 1025 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 AURKCQ9UQB9 309 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 HNRNPCL2B2RXH8 293 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 ANKRD65E5RJM6 399 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 HNRNPCL1O60812 293 aaKnown RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 ENO3P13929 434 aaPredicted RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 HSD17B3P37058 310 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 GRM5P41594 1212 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 ACAP1Q15027 740 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 SH3BP5LQ7L8J4 393 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 STRA8Q7Z7C7 330 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 PNKPQ96T60 521 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 MRGBPQ9NV56 204 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 GGT7Q9UJ14 662 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 POLR2EP19388 210 aaKnown RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 PGM1P36871 562 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 PAPD7Q5XG87 772 aaKnown RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 B3GALNT2Q8NCR0 500 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 HTR3CQ8WXA8 447 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 KAT5Q92993 513 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 STX18Q9P2W9 335 aaKnown RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 STOML1Q9UBI4 398 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 DCDC2Q9UHG0 476 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 MRPS23Q9Y3D9 190 aaKnown RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 MRPL42Q9Y6G3 142 aaKnown RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 O00370 1275 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 SLC9A3R1O14745 358 aaPredicted RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 ATP5BP06576 529 aaKnown RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 NOS2P35228 1153 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 NCKAP1LP55160 1127 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 POU6F1Q14863 301 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 EEF1DP3Q658K8 133 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 WNT8BQ93098 351 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 NMRK1Q9NWW6 199 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 BTBD7Q9P203 1132 aa14.51□□□□□ -0.09
USP3-204ENST00000540797 UBA2Q9UBT2 640 aaPredicted RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 FAF1Q9UNN5 650 aaPredicted RBP14.51□□□□□ -0.09
USP3-204ENST00000540797 GJB6O95452 261 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms