RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 SLC22A12Q96S37 553 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 PEBP4Q96S96 227 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 CDK5RAP1Q96SZ6 601 aaKnown RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 TBCBQ99426 244 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 IRX2Q9BZI1 471 aaPredicted RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 RAB6CQ9H0N0 254 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 CCSER2Q9H7U1 834 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 OLA1Q9NTK5 396 aaKnown RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 TMEM51Q9NW97 253 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 TRPM5Q9NZQ8 1165 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 IP6K2Q9UHH9 426 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 CDH22Q9UJ99 828 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 NEU3Q9UQ49 428 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 KIAA1549LQ6ZVL6 1849 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 C2orf78A6NCI8 922 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 MOCS3O95396 460 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 TRUB2O95900 331 aaKnown RBP11□□□□□ -0.65
VPS33A-204ENST00000540669 RARGP13631 454 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 TCF4P15884 667 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 PDGFRAP16234 1089 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 CEBPBP17676 345 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 FCARP24071 287 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 SDC4P31431 198 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 NTHL1P78549 312 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 ZXDBP98169 803 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 CYP4F8P98187 520 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 USP4Q13107 963 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 SEMA3BQ13214 749 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 PPP2R5DQ14738 602 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 TRIP4Q15650 581 aaPredicted RBP11□□□□□ -0.65
VPS33A-204ENST00000540669 TAZQ16635 292 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 C15orf59Q2T9L4 293 aaPredicted RBP11□□□□□ -0.65
VPS33A-204ENST00000540669 ARHGAP29Q52LW3 1261 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 STXBP5Q5T5C0 1151 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 SH3PXD2AQ5TCZ1 1133 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 LRRC38Q5VT99 294 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 RNF43Q68DV7 783 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 DCUN1D2Q6PH85 259 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 TMC5Q6UXY8 1006 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 POLNQ7Z5Q5 900 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 GRASPQ7Z6J2 395 aaPredicted RBP11□□□□□ -0.65
VPS33A-204ENST00000540669 PHLDB2Q86SQ0 1253 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 NT5DC3Q86UY8 548 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 NPAS3Q8IXF0 933 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 FAM217AQ8IXS0 508 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 ELMOD1Q8N336 334 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 KIAA1958Q8N8K9 716 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 TRIM58Q8NG06 486 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 RIN3Q8TB24 985 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 EDEM1Q92611 657 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 BTBD6Q96KE9 485 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 FCRL2Q96LA5 508 aaPredicted RBP11□□□□□ -0.65
VPS33A-204ENST00000540669 SERPINB11Q96P15 392 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 CORO1BQ9BR76 489 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 GOLPH3Q9H4A6 298 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 UBE2ZQ9H832 354 aaPredicted RBP11□□□□□ -0.65
VPS33A-204ENST00000540669 TRPV4Q9HBA0 871 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 ANLNQ9NQW6 1124 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 PIGVQ9NUD9 493 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 STOML2Q9UJZ1 356 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 STAP1Q9ULZ2 295 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 ARHGAP26Q9UNA1 814 aa11□□□□□ -0.65
VPS33A-204ENST00000540669 MAGED2Q9UNF1 606 aaPredicted RBP11□□□□□ -0.65
VPS33A-204ENST00000540669 HBS1LQ9Y450 684 aaKnown RBP11□□□□□ -0.65
VPS33A-204ENST00000540669 A0A1W2PRU2 124 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 MACROD2A1Z1Q3 448 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 KCNU1A8MYU2 1149 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 MYO1FO00160 1098 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 BUB1O43683 1085 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 ZNF500O60304 480 aaPredicted RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 NCAM1P13591 858 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 KCNA5P22460 613 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 CTNNA2P26232 953 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 IL1R2P27930 398 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 CTNNA1P35221 906 aaKnown RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 RDXP35241 583 aaKnown RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 SLC1A1P43005 524 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 ARSEP51690 589 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 TAS2R40P59535 323 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 NRG1Q02297 640 aaPredicted RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 IFRD2Q12894 506 aaPredicted RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 IFI16Q16666 785 aaKnown RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 DCAF6Q58WW2 860 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 RARS2Q5T160 578 aaKnown RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 HECTD3Q5T447 861 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 MANEALQ5VSG8 457 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 BTBD8Q5XKL5 378 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 CES5AQ6NT32 575 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 Q6ZNB5 142 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 PDZD4Q76G19 769 aaPredicted RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 ITFG1Q8TB96 612 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 FAM172AQ8WUF8 416 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 TRIM44Q96DX7 344 aaPredicted RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 HES6Q96HZ4 224 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 NCAPGQ9BPX3 1015 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 KLF16Q9BXK1 252 aaPredicted RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 TLR10Q9BXR5 811 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 SLC46A2Q9BY10 475 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 RNF38Q9H0F5 515 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms