RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 ANKRD52Q8NB46 1076 aa18.7■□□□□ 0.58
PCF11-206ENST00000533018 SMARCE1Q969G3 411 aa18.7■□□□□ 0.58
PCF11-206ENST00000533018 NUSAP1Q9BXS6 441 aaKnown RBP18.7■□□□□ 0.58
PCF11-206ENST00000533018 UBXN6Q9BZV1 441 aa18.7■□□□□ 0.58
PCF11-206ENST00000533018 CALCOCO1Q9P1Z2 691 aa18.7■□□□□ 0.58
PCF11-206ENST00000533018 HOOK1Q9UJC3 728 aaKnown RBP18.7■□□□□ 0.58
PCF11-206ENST00000533018 HCN2Q9UL51 889 aa18.7■□□□□ 0.58
PCF11-206ENST00000533018 STRIP2Q9ULQ0 834 aa18.7■□□□□ 0.58
PCF11-206ENST00000533018 ATXN2Q99700 1313 aaKnown RBP18.7■□□□□ 0.58
PCF11-206ENST00000533018 CD19P15391 556 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 CHKAP35790 457 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 NOVA1P51513 510 aaKnown RBP18.69■□□□□ 0.58
PCF11-206ENST00000533018 TKTL1P51854 596 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 YWHAGP61981 247 aaKnown RBP eCLIP18.69■□□□□ 0.58
PCF11-206ENST00000533018 LRMPQ12912 555 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 BECN1Q14457 450 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 GOLGA7BQ2TAP0 167 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 ARHGAP17Q68EM7 881 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 SLC36A4Q6YBV0 504 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 SYT12Q8IV01 421 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 IPO4Q8TEX9 1081 aaKnown RBP18.69■□□□□ 0.58
PCF11-206ENST00000533018 DCLK3Q9C098 648 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 TMEM74BQ9NUR3 256 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 CACNA2D2Q9NY47 1150 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 MARCH2Q9P0N8 246 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 HESX1Q9UBX0 185 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 ANGPTL2Q9UKU9 493 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 RAD54BQ9Y620 910 aa18.69■□□□□ 0.58
PCF11-206ENST00000533018 TNRC6BQ9UPQ9 1833 aaKnown RBP18.68■□□□□ 0.58
PCF11-206ENST00000533018 A0A1W2PQF6 199 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 SLC12A8A0AV02 714 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 TRIM49BA6NDI0 452 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 ZBED1O96006 694 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 KLKB1P03952 638 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 CYBBP04839 570 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 CFIP05156 583 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 CISD3P0C7P0 127 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 ITPKAP23677 461 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 PMS1P54277 932 aaKnown RBP18.68■□□□□ 0.58
PCF11-206ENST00000533018 MCCD1P59942 119 aaPredicted RBP18.68■□□□□ 0.58
PCF11-206ENST00000533018 YWHAEP62258 255 aaKnown RBP18.68■□□□□ 0.58
PCF11-206ENST00000533018 LMAN2Q12907 356 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 STIM1Q13586 685 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 CUL2Q13617 745 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 SPDYCQ5MJ68 293 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 ISM2Q6H9L7 571 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 KIAA1211LQ6NV74 962 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 DENND1CQ8IV53 801 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 ZNF276Q8N554 614 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 FAM124BQ9H5Z6 455 aaPredicted RBP18.68■□□□□ 0.58
PCF11-206ENST00000533018 LRRC4Q9HBW1 653 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 ARMCX3Q9UH62 379 aaPredicted RBP18.68■□□□□ 0.58
PCF11-206ENST00000533018 TSPAN16Q9UKR8 245 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 CEP295Q9C0D2 2601 aa18.68■□□□□ 0.58
PCF11-206ENST00000533018 ADAMTS9Q9P2N4 1935 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 WASH3PC4AMC7 463 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 ZNF217O75362 1048 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 DPP6P42658 865 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 MAPK8P45983 427 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 SGO2Q562F6 1265 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 RAB41Q5JT25 222 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 SH3PXD2AQ5TCZ1 1133 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 NDRG1Q92597 394 aaKnown RBP18.67■□□□□ 0.58
PCF11-206ENST00000533018 IPO9Q96P70 1041 aaKnown RBP18.67■□□□□ 0.58
PCF11-206ENST00000533018 ULBP1Q9BZM6 244 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 EVLQ9UI08 416 aaPredicted RBP18.67■□□□□ 0.58
PCF11-206ENST00000533018 AGO1Q9UL18 857 aaKnown RBP18.67■□□□□ 0.58
PCF11-206ENST00000533018 CYP8B1Q9UNU6 501 aa18.67■□□□□ 0.58
PCF11-206ENST00000533018 ASCC3Q8N3C0 2202 aaKnown RBP18.66■□□□□ 0.58
PCF11-206ENST00000533018 TULP2O00295 520 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 CDX4O14627 284 aaPredicted RBP18.66■□□□□ 0.58
PCF11-206ENST00000533018 PSMA7O14818 248 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 GIPC1O14908 333 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 NDUFV2P19404 249 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 ATXN3P54252 364 aaPredicted RBP18.66■□□□□ 0.58
PCF11-206ENST00000533018 BCAT1P54687 386 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 NUCB2P80303 420 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 LRRC63Q05C16 580 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 PDE4CQ08493 712 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 COBLL1Q53SF7 1204 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 KIAA1324Q6UXG2 1013 aaKnown RBP18.66■□□□□ 0.58
PCF11-206ENST00000533018 UBA3Q8TBC4 463 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 DDI1Q8WTU0 396 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 GABRG3Q99928 467 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 GTPBP4Q9BZE4 634 aaKnown RBP18.66■□□□□ 0.58
PCF11-206ENST00000533018 SLC6A17Q9H1V8 727 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 COQ4Q9Y3A0 265 aa18.66■□□□□ 0.58
PCF11-206ENST00000533018 IGHV1OR15-9A0A0B4J2B8 117 aa18.65■□□□□ 0.58
PCF11-206ENST00000533018 GFRA2O00451 464 aa18.65■□□□□ 0.58
PCF11-206ENST00000533018 XPO1O14980 1071 aaKnown RBP18.65■□□□□ 0.58
PCF11-206ENST00000533018 NDUFS2O75306 463 aa18.65■□□□□ 0.58
PCF11-206ENST00000533018 PENKP01210 267 aaPredicted RBP18.65■□□□□ 0.58
PCF11-206ENST00000533018 ENGP17813 658 aa18.65■□□□□ 0.58
PCF11-206ENST00000533018 TBXAS1P24557 533 aaPredicted RBP18.65■□□□□ 0.58
PCF11-206ENST00000533018 PMLP29590 882 aa18.65■□□□□ 0.58
PCF11-206ENST00000533018 ZNF33AQ06730 810 aa18.65■□□□□ 0.58
PCF11-206ENST00000533018 BST2Q10589 180 aaKnown RBP18.65■□□□□ 0.58
PCF11-206ENST00000533018 STARD3Q14849 445 aa18.65■□□□□ 0.58
PCF11-206ENST00000533018 ST3GAL2Q16842 350 aa18.65■□□□□ 0.58
PCF11-206ENST00000533018 CCDC40Q4G0X9 1142 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms