RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 COG7P83436 770 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 ST3GAL2Q16842 350 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 SH3PXD2AQ5TCZ1 1133 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 KLHDC10Q6PID8 442 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 SLC36A4Q6YBV0 504 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 Q6ZNB5 142 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 SYT12Q8IV01 421 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 DENND1CQ8IV53 801 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 FMR1NBQ8N0W7 255 aaPredicted RBP13.64□□□□□ -0.23
CPSF1-204ENST00000529288 ARHGAP18Q8N392 663 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 ANKRD52Q8NB46 1076 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 UBA3Q8TBC4 463 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 ULBP1Q9BZM6 244 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 DCLK3Q9C098 648 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 LRRC4Q9HBW1 653 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 CLIC5Q9NZA1 410 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 MARK1Q9P0L2 795 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 MARCH2Q9P0N8 246 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 HESX1Q9UBX0 185 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 ZNF510Q9Y2H8 683 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 STARD13Q9Y3M8 1113 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 RALGAPA1Q6GYQ0 2036 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 TULP2O00295 520 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 CDX4O14627 284 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-204ENST00000529288 NDUFS2O75306 463 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 CYBBP04839 570 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 ENGP17813 658 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 NDUFV2P19404 249 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 CHKAP35790 457 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 PMS1P54277 932 aaKnown RBP13.63□□□□□ -0.23
CPSF1-204ENST00000529288 FKBP3Q00688 224 aaKnown RBP13.63□□□□□ -0.23
CPSF1-204ENST00000529288 PDE4CQ08493 712 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 LMAN2Q12907 356 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 FOXC1Q12948 553 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 CUL2Q13617 745 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 SGO2Q562F6 1265 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 ARHGAP17Q68EM7 881 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 RGL4Q8IZJ4 473 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 DEFB124Q8NES8 71 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 DDI1Q8WTU0 396 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 IPO9Q96P70 1041 aaKnown RBP13.63□□□□□ -0.23
CPSF1-204ENST00000529288 UBXN6Q9BZV1 441 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 ARMCX3Q9UH62 379 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-204ENST00000529288 TSPAN16Q9UKR8 245 aa13.63□□□□□ -0.23
CPSF1-204ENST00000529288 AGO1Q9UL18 857 aaKnown RBP13.63□□□□□ -0.23
CPSF1-204ENST00000529288 IGHV1OR15-9A0A0B4J2B8 117 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 SLC16A3O15427 465 aaKnown RBP13.62□□□□□ -0.23
CPSF1-204ENST00000529288 TSPAN3O60637 253 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 ZNF217O75362 1048 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 ZBED1O96006 694 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 LCP1P13796 627 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 PMLP29590 882 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 YWHAEP62258 255 aaKnown RBP13.62□□□□□ -0.23
CPSF1-204ENST00000529288 ARID5AQ03989 594 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 ZNF33AQ06730 810 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 ZNF252P-AS1Q0IIN9 211 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 BECN1Q14457 450 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 STARD3Q14849 445 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 GEN1Q17RS7 908 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 CCDC40Q4G0X9 1142 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 FYB2Q5VWT5 728 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 SIX6OS1Q8N1H7 587 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 TRIML1Q8N9V2 468 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 RNF139Q8WU17 664 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 EDEM1Q92611 657 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 P2RY11Q96G91 374 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 FAXDC2Q96IV6 333 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 GSDMAQ96QA5 445 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 CIPCQ9C0C6 399 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 CD93Q9NPY3 652 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 EVLQ9UI08 416 aaPredicted RBP13.62□□□□□ -0.23
CPSF1-204ENST00000529288 HOOK1Q9UJC3 728 aaKnown RBP13.62□□□□□ -0.23
CPSF1-204ENST00000529288 STON1Q9Y6Q2 735 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 EML5Q05BV3 1969 aa13.62□□□□□ -0.23
CPSF1-204ENST00000529288 SPTBN2O15020 2390 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 PIK3R2O00459 728 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 XPO1O14980 1071 aaKnown RBP13.61□□□□□ -0.23
CPSF1-204ENST00000529288 SYNCRIPO60506 623 aaKnown RBP13.61□□□□□ -0.23
CPSF1-204ENST00000529288 DPP6P42658 865 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 RGS7P49802 495 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 BCAT1P54687 386 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 MFAP3P55082 362 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 GFPT1Q06210 699 aaPredicted RBP13.61□□□□□ -0.23
CPSF1-204ENST00000529288 ADIGQ0VDE8 80 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 STIM1Q13586 685 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 DUOXA1Q1HG43 343 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 SPDYCQ5MJ68 293 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 KLHL10Q6JEL2 608 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 FMNL3Q8IVF7 1028 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 UCMAQ8WVF2 138 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 HSPA12BQ96MM6 686 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 GABRG3Q99928 467 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 SFMBT1Q9UHJ3 866 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 PILRBQ9UKJ0 227 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 SLC6A14Q9UN76 642 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 PCDHB4Q9Y5E5 795 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 MYO16Q9Y6X6 1858 aa13.61□□□□□ -0.23
CPSF1-204ENST00000529288 GFRA2O00451 464 aa13.6□□□□□ -0.23
CPSF1-204ENST00000529288 PSMA7O14818 248 aa13.6□□□□□ -0.23
CPSF1-204ENST00000529288 PENKP01210 267 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms