RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SLC25A43Q8WUT9 341 aaPredicted RBP3.68□□□□□ -1.82
CD44-229ENST00000528672 ST8SIA4Q92187 359 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 ZUFSPQ96AP4 578 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 ZNF668Q96K58 619 aaPredicted RBP3.68□□□□□ -1.82
CD44-229ENST00000528672 C7orf26Q96N11 449 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 ZNF341Q9BYN7 854 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 REXO4Q9GZR2 422 aaKnown RBP3.68□□□□□ -1.82
CD44-229ENST00000528672 SCAND2PQ9GZW5 306 aaPredicted RBP3.68□□□□□ -1.82
CD44-229ENST00000528672 ZCWPW1Q9H0M4 648 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 PCED1AQ9H1Q7 454 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 G6PC2Q9NQR9 355 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 NDUFAF4Q9P032 175 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 DNAJB11Q9UBS4 358 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 FZD1Q9UP38 647 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 FRMD4BQ9Y2L6 1034 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 DERAQ9Y315 318 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 CCDC195A0A1B0GUA6 201 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 FSD2A1L4K1 749 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 TSPAN3O60637 253 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 RTN3O95197 1032 aaPredicted RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 ADH4P08319 380 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 HNRNPA1P09651 372 aaKnown RBP eCLIP3.67□□□□□ -1.82
CD44-229ENST00000528672 KCNA2P16389 499 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 KCNA3P22001 575 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 ITPKBP27987 946 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 SERPINA4P29622 427 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 PRKAR1BP31321 381 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 MCM2P49736 904 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 ATXN1P54253 815 aaKnown RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 DCAF7P61962 342 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 IRX3P78415 501 aaPredicted RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 POU5F1Q01860 360 aaKnown RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.67□□□□□ -1.82
CD44-229ENST00000528672 MYO1EQ12965 1108 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 SF3B3Q15393 1217 aaKnown RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 TRIM60Q495X7 471 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 TTC22Q5TAA0 569 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 DEPDC1Q5TB30 811 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 ATG16L1Q676U5 607 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 RGS7BPQ6MZT1 257 aaPredicted RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 BRINP3Q76B58 766 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 SYT13Q7L8C5 426 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 ZNF627Q7L945 461 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 MAVSQ7Z434 540 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 OR8H2Q8N162 312 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 C11orf44Q8N8P7 122 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 USP38Q8NB14 1042 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 TDRD7Q8NHU6 1098 aaKnown RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 ADAMTS18Q8TE60 1221 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 ANP32BQ92688 251 aaKnown RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 TIGD1Q96MW7 591 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 HIST1H2AAQ96QV6 131 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 PNKPQ96T60 521 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 TREX2Q9BQ50 279 aaPredicted RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 NUDT16L1Q9BRJ7 211 aaKnown RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 REEP2Q9BRK0 252 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 SDF4Q9BRK5 362 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 TTPALQ9BTX7 342 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 MRIQ9BWK5 157 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 AGXT2Q9BYV1 514 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 WDR11Q9BZH6 1224 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 TRIM5Q9C035 493 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 NRDE2Q9H7Z3 1164 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 ORC3Q9UBD5 711 aaPredicted RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 KCND3Q9UK17 655 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 NDRG4Q9ULP0 352 aaKnown RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 TBX20Q9UMR3 447 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 USP22Q9UPT9 525 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 TTLL3Q9Y4R7 772 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 SNX14Q9Y5W7 946 aa3.67□□□□□ -1.82
CD44-229ENST00000528672 POLR2AP24928 1970 aaKnown RBP3.67□□□□□ -1.82
CD44-229ENST00000528672 FAM90A18PA6NE21 464 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 FAM90A16PA6NEW6 464 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 FAM90A9PA6NNJ1 464 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 FAM90A5PA8MXJ8 464 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 NPIPB8E9PQR5 432 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 F5H697 171 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 MGST3O14880 152 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 CD3EAPO15446 510 aaKnown RBP3.66□□□□□ -1.82
CD44-229ENST00000528672 USO1O60763 962 aaKnown RBP3.66□□□□□ -1.82
CD44-229ENST00000528672 TMCC2O75069 709 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 TAF5LO75529 589 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 TFRCP02786 760 aaKnown RBP3.66□□□□□ -1.82
CD44-229ENST00000528672 CHRM2P08172 466 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 CNPP09543 421 aaKnown RBP3.66□□□□□ -1.82
CD44-229ENST00000528672 FAM90A15PP0C7V4 464 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 FAM90A14PP0C7W9 464 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 ITGALP20701 1170 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 RPS6KB1P23443 525 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 BMPR1AP36894 532 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 LIPAP38571 399 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 NPTX2P47972 431 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 PGDP52209 483 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 BLOC1S1P78537 153 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 TAP1Q03518 808 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 FPGSQ05932 587 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 DPTQ07507 201 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 DYRK1AQ13627 763 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 E2F2Q14209 437 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 CSHL1Q14406 222 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms