RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ZDHHC17Q8IUH5 632 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 SPATA2LQ8IUW3 424 aaPredicted RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 MSANTD4Q8NCY6 345 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 OLIG1Q8TAK6 271 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 UBA3Q8TBC4 463 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 KIAA1524Q8TCG1 905 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 SLC2A14Q8TDB8 520 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 MICAL1Q8TDZ2 1067 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 HDAC7Q8WUI4 952 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 C18orf8Q96DM3 657 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 TRIM11Q96F44 468 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 SMARCD1Q96GM5 515 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 SPATA17Q96L03 361 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 B3GALT6Q96L58 329 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 UHRF1Q96T88 793 aaPredicted RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 LPIN3Q9BQK8 851 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 EMILIN2Q9BXX0 1053 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 ZBP1Q9H171 429 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 NSUN3Q9H649 340 aaKnown RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 TLR9Q9NR96 1032 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 TMLHEQ9NVH6 421 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 COMMD8Q9NX08 183 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 WDR35Q9P2L0 1181 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 AFF4Q9UHB7 1163 aaKnown RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 CDY1Q9Y6F8 540 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.79□□□□□ -1.16
CD44-228ENST00000528455 COL4A4P53420 1690 aaPredicted RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 BDP1A6H8Y1 2624 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 TSC2P49815 1807 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PTPRDP23468 1912 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 GOLGA6L9A6NEM1 432 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 C2orf71A6NGG8 1288 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 BTNL10A8MVZ5 291 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 FSCN2O14926 492 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 NCK2O43639 380 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 CPNE3O75131 537 aaKnown RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 ALBP02768 609 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 CNPP09543 421 aaKnown RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 FAM200BP0CF97 657 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 MYBL1P10243 752 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 CCDC130P13994 396 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 BDNFP23560 247 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 DNAJB1P25685 340 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 GRIK1P39086 918 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 NSFP46459 744 aaKnown RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 VAV2P52735 878 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 GALCP54803 685 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PSMC1P62191 440 aaKnown RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 RPL10AP62906 217 aaKnown RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 KIF5AQ12840 1032 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PTP4A2Q12974 167 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 DUSP4Q13115 394 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PTPN14Q15678 1187 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 GOLGA7BQ2TAP0 167 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 LIN9Q5TKA1 542 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PM20D1Q6GTS8 502 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PSAPL1Q6NUJ1 521 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PMF1Q6P1K2 205 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 CLEC20AQ6ZU45 233 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 TCEAL8Q8IYN2 117 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 MCOLN2Q8IZK6 566 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 SCML4Q8N228 414 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 RNF10Q8N5U6 811 aaKnown RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 CPA5Q8WXQ8 436 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PPP1R13BQ96KQ4 1090 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 C8orf48Q96LL4 319 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 KLHL5Q96PQ7 755 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 TMEM209Q96SK2 561 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 SMOQ99835 787 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 TCF25Q9BQ70 676 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 MED10Q9BTT4 135 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 UBE2ZQ9H832 354 aaPredicted RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 FAM49BQ9NUQ9 324 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 SPTLC3Q9NUV7 552 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 SEPT11Q9NVA2 429 aaKnown RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 IL37Q9NZH6 218 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 ADAM22Q9P0K1 906 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 DPP7Q9UHL4 492 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 STRIP2Q9ULQ0 834 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 ZKSCAN5Q9Y2L8 839 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 PPP2R2CQ9Y2T4 447 aa7.78□□□□□ -1.16
CD44-228ENST00000528455 TCF20Q9UGU0 1960 aaKnown RBP7.78□□□□□ -1.16
CD44-228ENST00000528455 BRWD1Q9NSI6 2320 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 A0A0A6YYK5 440 aaPredicted RBP7.77□□□□□ -1.17
CD44-228ENST00000528455 WDR27A2RRH5 827 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 MTMR11A4FU01 709 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 SIGLEC16A6NMB1 481 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 M0QYV0 167 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 CLDN5O00501 218 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 GRM6O15303 877 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 TEX28O15482 410 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 ADAM12O43184 909 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 KRT86O43790 486 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 BEST1O76090 585 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 FBXO21O94952 628 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 CYP1A2P05177 515 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 CALB1P05937 261 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 TMEM253P0C7T8 217 aa7.77□□□□□ -1.17
CD44-228ENST00000528455 HAPLN1P10915 354 aaPredicted RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms