RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 KDELR1P24390 212 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 PCK1P35558 622 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 DAOAP59103 153 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 RPL10AP62906 217 aaKnown RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 RAB33AQ14088 237 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 TAZQ16635 292 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 MGAT5BQ3V5L5 792 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 DRICH1Q6PGQ1 229 aaPredicted RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 ZNF771Q7L3S4 317 aaPredicted RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 NUP93Q8N1F7 819 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 FAM129AQ9BZQ8 928 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 UBE2OQ9C0C9 1292 aaKnown RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 RXFP1Q9HBX9 757 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 MTRF1LQ9UGC7 380 aaKnown RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 MAFFQ9ULX9 164 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 USP18Q9UMW8 372 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 EFR3BQ9Y2G0 817 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 USP17L7P0C7H9 530 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 ATF2P15336 505 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 SDC4P31431 198 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 SLC5A3P53794 718 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 PMS2P54278 862 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 UBE3AQ05086 875 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 DUSP4Q13115 394 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 DDR2Q16832 855 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 CEP85LQ5SZL2 805 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 FAM149B1Q96BN6 582 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 SPATA17Q96L03 361 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 NCAPGQ9BPX3 1015 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 EPB41L4BQ9H329 900 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 DNPEPQ9ULA0 475 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 SLC27A5Q9Y2P5 690 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 PCDHA11Q9Y5I1 949 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 PTPRDP23468 1912 aa19.65■□□□□ 0.74
VPS28-207ENST00000526977 DPYSL4O14531 572 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 VNN2O95498 520 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 DNAJB2P25686 324 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 CALCOCO2Q13137 446 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 C15orf59Q2T9L4 293 aaPredicted RBP19.64■□□□□ 0.74
VPS28-207ENST00000526977 CCDC14Q49A88 953 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 RAB6CQ53S08 254 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 TMC7Q7Z402 723 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 SAMD11Q96NU1 681 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 GDF15Q99988 308 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 RAB6CQ9H0N0 254 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 FBXO44Q9H4M3 255 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 POPDC2Q9HBU9 364 aa19.64■□□□□ 0.74
VPS28-207ENST00000526977 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.64■□□□□ 0.74
VPS28-207ENST00000526977 DRG1Q9Y295 367 aaKnown RBP19.64■□□□□ 0.74
VPS28-207ENST00000526977 KIAA1671Q9BY89 1806 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 ADCY8P40145 1251 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 MATKP42679 507 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 ZNF844Q08AG5 666 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 BYSLQ13895 437 aaKnown RBP19.64■□□□□ 0.73
VPS28-207ENST00000526977 RHBDF2Q6PJF5 856 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 KCTD6Q8NC69 237 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 FAM76AQ8TAV0 307 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 SNF8Q96H20 258 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 PEBP4Q96S96 227 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 SEPT5Q99719 369 aaPredicted RBP19.64■□□□□ 0.73
VPS28-207ENST00000526977 DDX23Q9BUQ8 820 aaKnown RBP19.64■□□□□ 0.73
VPS28-207ENST00000526977 TRIM62Q9BVG3 475 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 PABPC3Q9H361 631 aaKnown RBP19.64■□□□□ 0.73
VPS28-207ENST00000526977 TMBIM4Q9HC24 238 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 COMMD8Q9NX08 183 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 IRAK3Q9Y616 596 aa19.64■□□□□ 0.73
VPS28-207ENST00000526977 GRXCR1A8MXD5 290 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 CXCL14O95715 111 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 CD48P09326 243 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 PTPN9P43378 593 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 LMNB2Q03252 620 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 KCTD16Q68DU8 428 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 CYP4V2Q6ZWL3 525 aaPredicted RBP19.63■□□□□ 0.73
VPS28-207ENST00000526977 SCAMP5Q8TAC9 235 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 AUTS2Q8WXX7 1259 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 NDRG1Q92597 394 aaKnown RBP19.63■□□□□ 0.73
VPS28-207ENST00000526977 C11orf84Q9BUA3 381 aaPredicted RBP19.63■□□□□ 0.73
VPS28-207ENST00000526977 CRISPLD1Q9H336 500 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 YJEFN3A6XGL0 299 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 E7ENQ6 273 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 DAB1O75553 588 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 RTN3O95197 1032 aaPredicted RBP19.63■□□□□ 0.73
VPS28-207ENST00000526977 MYOGP15173 224 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 KLRC2P26717 231 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 NOS2P35228 1153 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 FAM109BQ6ICB4 259 aaPredicted RBP19.63■□□□□ 0.73
VPS28-207ENST00000526977 DENND5BQ6ZUT9 1274 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 TTC9BQ8N6N2 239 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 SPPL3Q8TCT6 385 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 HSPH1Q92598 858 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 CFAP57Q96MR6 1250 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 SLC2A13Q96QE2 648 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 C17orf80Q9BSJ5 609 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 SEMA4AQ9H3S1 761 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 ALG13Q9NP73 1137 aaKnown RBP19.63■□□□□ 0.73
VPS28-207ENST00000526977 IL37Q9NZH6 218 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 ZNF148Q9UQR1 794 aa19.63■□□□□ 0.73
VPS28-207ENST00000526977 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.62■□□□□ 0.73
VPS28-207ENST00000526977 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.62■□□□□ 0.73
VPS28-207ENST00000526977 TEX28O15482 410 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms