RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 AP3D1O14617 1153 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAPN9O14815 690 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSPAN4O14817 238 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR46O15213 610 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NKRFO15226 690 aaKnown RBP eCLIP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 YY2O15391 372 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNQ3O43525 872 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 AHCYL1O43865 530 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 AKR1B10O60218 316 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D4O60343 1298 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MSCO60682 206 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 OPHN1O60890 802 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP1R11O60927 126 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZC3H11AO75152 810 aaKnown RBP eCLIP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GUCY1B2O75343 617 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTP4A3O75365 173 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TULP3O75386 442 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERAL1O75616 437 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 BEST1O76090 585 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEC24DO94855 1032 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRPF6O94906 941 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GOSR1O95249 250 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCNDBP1O95273 360 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TGDSO95455 350 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSPA4LO95757 839 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GLP2RO95838 553 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCGB1D1O95968 90 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL18BPO95998 194 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHEK2O96017 543 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRLP01236 227 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 IGLV2-14P01704 120 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FGBP02675 491 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MT-ND3P03897 115 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MT-ND5P03915 603 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TK1P04183 234 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 A1BGP04217 495 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 AMY2AP04746 511 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRKCBP05771 671 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LPLP06858 475 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADRB2P07550 413 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MMEP08473 750 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ITGA2BP08514 1039 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHRM5P08912 532 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNPP09543 421 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CSF1P09603 554 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC159P0C7I6 412 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A13PP0C7W8 464 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A24PP0C7X0 464 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CSH1P0DML2 217 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CSH2P0DML3 217 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAP2AP10114 183 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 KITP10721 976 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 UBL4AP11441 157 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HARSP12081 509 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYL4P12829 197 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LAMP2P13473 410 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 EEF2P13639 858 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNNT1P13805 278 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TYRP14679 529 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 BRAFP15056 766 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPS2P15880 293 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PORP16435 677 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPPBP16860 134 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 IFNAR1P17181 557 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP5JP18859 108 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HDCP19113 662 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 EN2P19622 333 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 AMY2BP19961 511 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HLA-DPA1P20036 260 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ITGALP20701 1170 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 EDNRBP24530 442 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTSSP25774 331 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NFKBIAP25963 317 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CASQ1P31415 396 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HPDP32754 393 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRK5P34947 590 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTPN7P35236 360 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACTN2P35609 894 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMC2P35998 433 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARL3P36405 182 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANP32AP39687 249 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NNMTP40261 264 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMB10P40306 273 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARL1P40616 181 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MLH1P40692 756 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RGS2P41220 211 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNF4AP41235 474 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRIA3P42263 894 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PAFAH1B1P43034 410 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNNT3P45378 269 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PHKA1P46020 1223 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TDO2P48775 406 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LMAN1P49257 510 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FLT3LGP49771 235 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RARRES1P49788 294 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTHFSP49914 203 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDK7P50613 346 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FXR1P51114 621 aaKnown RBP eCLIP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCNN1GP51170 649 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALDH3A2P51648 485 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms