RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 CHRDQ9H2X0 955 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 LUC7LQ9NQ29 371 aaKnown RBP21.11■□□□□ 0.97
USP53-208ENST00000514305 PRMT8Q9NR22 394 aaPredicted RBP21.11■□□□□ 0.97
USP53-208ENST00000514305 WDR87Q6ZQQ6 2873 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 PTPRDP23468 1912 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 ZNF292O60281 2723 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 TULP2O00295 520 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 ARNTLO00327 626 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 RTN2O75298 545 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 GLI1P08151 1106 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 UNGP13051 313 aaPredicted RBP21.1■□□□□ 0.97
USP53-208ENST00000514305 CYLC1P35663 651 aaPredicted RBP21.1■□□□□ 0.97
USP53-208ENST00000514305 ARHGAP29Q52LW3 1261 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 KIAA2013Q8IYS2 634 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 CCDC170Q8IYT3 715 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 WDTC1Q8N5D0 677 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 CPA5Q8WXQ8 436 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 RSPRY1Q96DX4 576 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 FAM126AQ9BYI3 521 aaPredicted RBP21.1■□□□□ 0.97
USP53-208ENST00000514305 ULBP1Q9BZM6 244 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 TASP1Q9H6P5 420 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 C8orf33Q9H7E9 229 aaPredicted RBP21.1■□□□□ 0.97
USP53-208ENST00000514305 NHEJ1Q9H9Q4 299 aaPredicted RBP21.1■□□□□ 0.97
USP53-208ENST00000514305 LMAN1LQ9HAT1 526 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 OBP2AQ9NY56 170 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 ADAM22Q9P0K1 906 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 ADAMTS1Q9UHI8 967 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 MYH10P35580 1976 aa21.1■□□□□ 0.97
USP53-208ENST00000514305 EP300Q09472 2414 aaPredicted RBP21.09■□□□□ 0.97
USP53-208ENST00000514305 KIF26AQ9ULI4 1882 aaPredicted RBP21.09■□□□□ 0.97
USP53-208ENST00000514305 E5RJQ4 531 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 ABL1P00519 1130 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 F11P03951 625 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 USP17L7P0C7H9 530 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 EIF4A3P38919 411 aaKnown RBP21.09■□□□□ 0.97
USP53-208ENST00000514305 GABRB2P47870 512 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 NRLP54845 237 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 CYP4F8P98187 520 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 LRRC32Q14392 662 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 ZNF268Q14587 947 aaPredicted RBP21.09■□□□□ 0.97
USP53-208ENST00000514305 SNX30Q5VWJ9 437 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 BTBD8Q5XKL5 378 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 E4F1Q66K89 784 aaPredicted RBP21.09■□□□□ 0.97
USP53-208ENST00000514305 OR6B2Q6IFH4 312 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 TSSK4Q6SA08 328 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 PHF13Q86YI8 300 aaPredicted RBP21.09■□□□□ 0.97
USP53-208ENST00000514305 ZNF687Q8N1G0 1237 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 SUMF1Q8NBK3 374 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 ZBTB44Q8NCP5 570 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 CCDC112Q8NEF3 446 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 SYT11Q9BT88 431 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 ABCC13Q9NSE7 274 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 OLA1Q9NTK5 396 aaKnown RBP21.09■□□□□ 0.97
USP53-208ENST00000514305 TMEM51Q9NW97 253 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 CLIC5Q9NZA1 410 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 ARHGAP20Q9P2F6 1191 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 NCDNQ9UBB6 729 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 OBSL1O75147 1896 aa21.09■□□□□ 0.97
USP53-208ENST00000514305 MYBL1P10243 752 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 DESP17661 470 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 MMP8P22894 467 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 SCNN1AP37088 669 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 TUBP50607 506 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 CCR3P51677 355 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 DAOAP59103 153 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 USP46P62068 366 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 SLC18A3Q16572 532 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 C10orf76Q5T2E6 689 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 HECTD3Q5T447 861 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 WDR59Q6PJI9 974 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 GPRIN1Q7Z2K8 1008 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 SCUBE3Q8IX30 993 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 ZNF276Q8N554 614 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 BPIFB1Q8TDL5 484 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 CPXM1Q96SM3 734 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 BAG1Q99933 345 aaPredicted RBP21.08■□□□□ 0.97
USP53-208ENST00000514305 NACA2Q9H009 215 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 ASNSD1Q9NWL6 643 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 THG1LQ9NWX6 298 aaKnown RBP21.08■□□□□ 0.97
USP53-208ENST00000514305 CHORDC1Q9UHD1 332 aaPredicted RBP21.08■□□□□ 0.97
USP53-208ENST00000514305 NAGPAQ9UK23 515 aa21.08■□□□□ 0.97
USP53-208ENST00000514305 FRYLO94915 3013 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 ZNF840PA6NDX5 716 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 DDX3XO00571 662 aaKnown RBP eCLIP21.07■□□□□ 0.964e-7■■■□□ 17.9
USP53-208ENST00000514305 CAPN9O14815 690 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 PTMAP06454 111 aaKnown RBP21.07■□□□□ 0.96
USP53-208ENST00000514305 WEE1P30291 646 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 YWHAGP61981 247 aaKnown RBP eCLIP21.07■□□□□ 0.96
USP53-208ENST00000514305 GOLGA8FQ08AF8 430 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 GOLGA8DPQ0D2H9 430 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 PTPN20Q4JDL3 420 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 CCDC122Q5T0U0 273 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 ALKBH5Q6P6C2 394 aaKnown RBP21.07■□□□□ 0.96
USP53-208ENST00000514305 ERMP1Q7Z2K6 904 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 RALGPS2Q86X27 583 aaPredicted RBP21.07■□□□□ 0.96
USP53-208ENST00000514305 SLC30A5Q8TAD4 765 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 RNF139Q8WU17 664 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 NELL1Q92832 810 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 FAM149B1Q96BN6 582 aa21.07■□□□□ 0.96
USP53-208ENST00000514305 PCDHB18PQ96TA0 734 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms