RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PLK4O00444 970 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 SLC16A4O15374 487 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 REM1O75628 298 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 THRBP10828 461 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 PTDSS1P48651 473 aaKnown RBP11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 PIK3CGP48736 1102 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 RPS6KA3P51812 740 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 NME3Q13232 169 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 EPC2Q52LR7 807 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 CXXC5Q7LFL8 322 aaKnown RBP11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 TTC30AQ86WT1 665 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 ITFG1Q8TB96 612 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 TATDN2Q93075 761 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 SRPK1Q96SB4 655 aaKnown RBP11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF518BQ9C0D4 1074 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 TMEM138Q9NPI0 162 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 CLN6Q9NWW5 311 aa11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 CCNL1Q9UK58 526 aaPredicted RBP11.52□□□□□ -0.56
LIMCH1-217ENST00000512946 MGAT4DA6NG13 374 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 EPHB2P29323 1055 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 ACADVLP49748 655 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 STRBPQ96SI9 672 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 SLC9A7Q96T83 725 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 PIH1D3Q9NQM4 214 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 SRP68Q9UHB9 627 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 KIAA1257Q9ULG3 409 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 RPS6KL1Q9Y6S9 549 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 PTENP60484 403 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 PGBD2Q6P3X8 592 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 ERICH5Q6P6B1 374 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 RBM44Q6ZP01 1051 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 ADCY4Q8NFM4 1077 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 CELF4Q9BZC1 486 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 GPRC5DQ9NZD1 345 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 DYRK3O43781 588 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 ZNF24P17028 368 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 GRIK3Q13003 919 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 ESRP1Q6NXG1 681 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 KCTD1Q719H9 257 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 SCN4BQ8IWT1 228 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 TMEM132CQ8N3T6 1108 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 FBXO36Q8NEA4 188 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 URGCPQ8TCY9 931 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 AIFM3Q96NN9 605 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 DPY30Q9C005 99 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 TMEM8AQ9HCN3 771 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 ZNF224Q9NZL3 707 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 RPS6KA6Q9UK32 745 aa11.52□□□□□ -0.57
LIMCH1-217ENST00000512946 SFI1A8K8P3 1242 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 ZC3H11AO75152 810 aaKnown RBP eCLIP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 SIN3BO75182 1162 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 IL18RAPO95256 599 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 SLC2A3P11169 496 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 CHRM3P20309 590 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 CRABP2P29373 138 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 YWHAZP63104 245 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 CSNK2BP67870 215 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 ARHGEF7Q14155 803 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 FASTKQ14296 549 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 CLEC16AQ2KHT3 1053 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 DCAF4L1Q3SXM0 396 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 SUPT20HL1Q3ZLR7 823 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 PERM1Q5SV97 790 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 OTUD3Q5T2D3 398 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 TIGD7Q6NT04 549 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 DNAJC10Q8IXB1 793 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 MB21D2Q8IYB1 491 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 MIER2Q8N344 545 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 SP140LQ9H930 580 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 PCDH9Q9HC56 1237 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 FAM217BQ9NTX9 383 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 PTTG2Q9NZH5 202 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 GPN3Q9UHW5 284 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 NUDT5Q9UKK9 219 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 SSR3Q9UNL2 185 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 ZDHHC9Q9Y397 364 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 GUCY1A2P33402 732 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 GPC1P35052 558 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 CDH4P55283 916 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 KLHDC7AQ5VTJ3 777 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 ACAD10Q6JQN1 1059 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 USP17L2Q6R6M4 530 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 MEIOBQ8N635 442 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 C12orf66Q96MD2 445 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 AGAP3Q96P47 875 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 EPB41L1Q9H4G0 881 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 AGPAT5Q9NUQ2 364 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 CLIC5Q9NZA1 410 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 RUVBL2Q9Y230 463 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 TELO2Q9Y4R8 837 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 PTGES3LE9PB15 166 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 NCAM2O15394 837 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 SNX3O60493 162 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 ITGA2P17301 1181 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 MAGEA2P43356 314 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 CDK9P50750 372 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 ARPP19P56211 112 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 MYL6P60660 151 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 PWP1Q13610 501 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 UBE2SQ16763 222 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms