RNA–Protein interactions for RNA: ENST00000493522.6

CTSA-209, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 901 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-209ENST00000493522 RPL34P49207 117 aaKnown RBP12.13□□□□□ -0.47
CTSA-209ENST00000493522 NRLP54845 237 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 SNX16P57768 344 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 NOMO3P69849 1222 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 SLC7A9P82251 487 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 EFEMP1Q12805 493 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 MTAPQ13126 283 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 PTPN20Q4JDL3 420 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 TDRD12Q587J7 1177 aaKnown RBP12.13□□□□□ -0.47
CTSA-209ENST00000493522 TSSK4Q6SA08 328 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 BHLHA9Q7RTU4 235 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 TMC6Q7Z403 805 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 SCUBE3Q8IX30 993 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 SCML4Q8N228 414 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 WDTC1Q8N5D0 677 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 BPIFB1Q8TDL5 484 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 SH3RF2Q8TEC5 729 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 IRGQQ8WZA9 623 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 EDEM1Q92611 657 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 FAM149B1Q96BN6 582 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 CDK5RAP1Q96SZ6 601 aaKnown RBP12.13□□□□□ -0.47
CTSA-209ENST00000493522 AGPAT1Q99943 283 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 TRMT61BQ9BVS5 477 aaKnown RBP12.13□□□□□ -0.47
CTSA-209ENST00000493522 RNF38Q9H0F5 515 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 NUCKS1Q9H1E3 243 aaKnown RBP12.13□□□□□ -0.47
CTSA-209ENST00000493522 CLIC5Q9NZA1 410 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 RAB23Q9ULC3 237 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 CAPN11Q9UMQ6 739 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 USP18Q9UMW8 372 aa12.13□□□□□ -0.47
CTSA-209ENST00000493522 NDRG2Q9UN36 371 aaKnown RBP12.13□□□□□ -0.47
CTSA-209ENST00000493522 LUC7L2Q9Y383 392 aaKnown RBP12.13□□□□□ -0.47
CTSA-209ENST00000493522 ACACBO00763 2458 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 LEFTY2O00292 366 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 SCAMP3O14828 347 aaKnown RBP12.12□□□□□ -0.47
CTSA-209ENST00000493522 TBX18O95935 607 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 ATP5C1P36542 298 aaKnown RBP12.12□□□□□ -0.47
CTSA-209ENST00000493522 ATXN1P54253 815 aaKnown RBP12.12□□□□□ -0.47
CTSA-209ENST00000493522 ZBED6P86452 979 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 KLHL30Q0D2K2 578 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 MTF1Q14872 753 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 ZNF77Q15935 545 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 ARHGAP29Q52LW3 1261 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 BSPRYQ5W0U4 402 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 OR6B2Q6IFH4 312 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 CC2D1AQ6P1N0 951 aaPredicted RBP12.12□□□□□ -0.47
CTSA-209ENST00000493522 TOGARAM2Q6ZUX3 1019 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 FAM183BPQ6ZVS7 135 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 TMEM110Q86TL2 294 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 ERICH1Q86X53 443 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 DDX42Q86XP3 938 aaKnown RBP eCLIP12.12□□□□□ -0.47
CTSA-209ENST00000493522 MIB1Q86YT6 1006 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 MFSD6LQ8IWD5 586 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 RIN3Q8TB24 985 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 RNF139Q8WU17 664 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 CPA5Q8WXQ8 436 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 CHRDQ9H2X0 955 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 TRPV5Q9NQA5 729 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 ABCC13Q9NSE7 274 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 OLA1Q9NTK5 396 aaKnown RBP12.12□□□□□ -0.47
CTSA-209ENST00000493522 THG1LQ9NWX6 298 aaKnown RBP12.12□□□□□ -0.47
CTSA-209ENST00000493522 CFAP97Q9P2B7 532 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 DNMT3LQ9UJW3 386 aa12.12□□□□□ -0.47
CTSA-209ENST00000493522 F5P12259 2224 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 ZNF263O14978 683 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 CYP1A1P04798 512 aaPredicted RBP12.11□□□□□ -0.47
CTSA-209ENST00000493522 SKILP12757 684 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 TNFAIP3P21580 790 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 PRKCIP41743 596 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 NSFP46459 744 aaKnown RBP12.11□□□□□ -0.47
CTSA-209ENST00000493522 IFNAR2P48551 515 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 CCR3P51677 355 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 ZNF75DP51815 510 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 GOLGA8FQ08AF8 430 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 GOLGA8DPQ0D2H9 430 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 FCHO2Q0JRZ9 810 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 FZD5Q13467 585 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 CLEC16AQ2KHT3 1053 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 C2CD6Q53TS8 623 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 MAMSTRQ6ZN01 415 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 MMS22LQ6ZRQ5 1243 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 IRF2BP2Q7Z5L9 587 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 FAM3CQ92520 227 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 C18orf8Q96DM3 657 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 PIWIL1Q96J94 861 aaKnown RBP12.11□□□□□ -0.47
CTSA-209ENST00000493522 ZFYVE19Q96K21 471 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 LRRC3BQ96PB8 259 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 PCDHB18PQ96TA0 734 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 C11orf70Q9BRQ4 267 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 RTKNQ9BST9 563 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 TRIM62Q9BVG3 475 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 HAUS4Q9H6D7 363 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 AIPL1Q9NZN9 384 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 MARCH2Q9P0N8 246 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 STRIP2Q9ULQ0 834 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 SH3BP1Q9Y3L3 701 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 PIAS3Q9Y6X2 628 aa12.11□□□□□ -0.47
CTSA-209ENST00000493522 SHISA7A6NL88 538 aa12.1□□□□□ -0.47
CTSA-209ENST00000493522 GOLGA8SH3BPF8 625 aa12.1□□□□□ -0.47
CTSA-209ENST00000493522 CAPN9O14815 690 aa12.1□□□□□ -0.47
CTSA-209ENST00000493522 CHADO15335 359 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms