RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 METTL25Q8N6Q8 603 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 NKAIN3Q8N8D7 197 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ADAMTS17Q8TE56 1095 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 FAM168AQ92567 244 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 MBD6Q96DN6 1003 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 KIF1BPQ96EK5 621 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 CALML4Q96GE6 196 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ZSWIM1Q9BR11 485 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TXLNGYQ9BZA5 131 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TAOK3Q9H2K8 898 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TLR8Q9NR97 1041 aaKnown RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 FBXO28Q9NVF7 368 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ZDHHC7Q9NXF8 308 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 SSX2IPQ9Y2D8 614 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3DA0A087WVF3 549 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3IA0A087WXS9 549 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3EA0A087X179 549 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3KA0A087X1G2 549 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 LOC105369274A0A096LPK9 316 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 LOC102723532A0A0G2JNH3 316 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 FAM170AA1A519 330 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3BA6NDS4 549 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3FA6NER0 549 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3LB9A6J9 549 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 MFAP3LO75121 409 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 SPARCP09486 303 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3HP0C7X1 549 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 CSH1P0DML2 217 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 CSH2P0DML3 217 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 CR2P20023 1033 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 PPIFP30405 207 aaKnown RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 PNPLA4P41247 253 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 LRMPQ12912 555 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ACOX1Q15067 660 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ELAVL1Q15717 326 aaKnown RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 PRICKLE4Q2TBC4 344 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3GQ6DHY5 549 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 SFRP4Q6FHJ7 346 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3CQ6IPX1 549 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ADGRG6Q86SQ4 1221 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D3Q8IZP1 549 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 OR4N4Q8N0Y3 316 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ABRAQ8N0Z2 381 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 C17orf53Q8N3J3 647 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 LSM14AQ8ND56 463 aaKnown RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 OR52N2Q8NGI0 321 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 PPP1R10Q96QC0 940 aaKnown RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 INTS2Q9H0H0 1204 aaKnown RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 SERHL2Q9H4I8 314 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 MROH8Q9H579 483 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 USP15Q9Y4E8 981 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ENTPD2Q9Y5L3 495 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 SNX8Q9Y5X2 465 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 RUSC2Q8N2Y8 1516 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 NISCHQ9Y2I1 1504 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 FER1L4A9Z1Z3 1794 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 VILLO15195 856 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 WDR47O94967 919 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 VNN1O95497 513 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 ACP5P13686 325 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 ALADP13716 330 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 KCNA2P16389 499 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 NFKBIAP25963 317 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 CD6P30203 668 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 PDE6CP51160 858 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 RARSP54136 660 aaKnown RBP5.1□□□□□ -1.59
VPS13A-212ENST00000493341 RBM6P78332 1123 aaKnown RBP5.1□□□□□ -1.59
VPS13A-212ENST00000493341 TIAL1Q01085 375 aaKnown RBP eCLIP5.1□□□□□ -1.59
VPS13A-212ENST00000493341 CDC16Q13042 620 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 SEMA3BQ13214 749 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 GRM7Q14831 915 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 CCDC144NLQ6NUI1 221 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 DENND1BQ6P3S1 775 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 INO80CQ6PI98 192 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-212ENST00000493341 FOXR2Q6PJQ5 311 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 SZRD1Q7Z422 152 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 TEX11Q8IYF3 940 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 CARFQ8N187 725 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 PTGR2Q8N8N7 351 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-212ENST00000493341 ZCCHC10Q8TBK6 192 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 SLC2A12Q8TD20 617 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 OSCP1Q8WVF1 389 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 RUFY2Q8WXA3 655 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 FAM120BQ96EK7 910 aaKnown RBP5.1□□□□□ -1.59
VPS13A-212ENST00000493341 NEU1Q99519 415 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 PAAF1Q9BRP4 392 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 VN1R3Q9BXE9 311 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 CLPBQ9H078 707 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 ALKBH4Q9NXW9 302 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 STEAP1Q9UHE8 339 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 CORO1CQ9ULV4 474 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-212ENST00000493341 OAZ3Q9UMX2 235 aa5.1□□□□□ -1.59
VPS13A-212ENST00000493341 DRG1Q9Y295 367 aaKnown RBP5.1□□□□□ -1.59
VPS13A-212ENST00000493341 SH2D7A6NKC9 451 aaPredicted RBP5.09□□□□□ -1.59
VPS13A-212ENST00000493341 HNRNPRO43390 633 aaKnown RBP5.09□□□□□ -1.59
VPS13A-212ENST00000493341 BEST1O76090 585 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 IPO13O94829 963 aaKnown RBP5.09□□□□□ -1.59
VPS13A-212ENST00000493341 GPANK1O95872 356 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 TUBB4AP04350 444 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 HLA-DOAP06340 250 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms