RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 PCDHB13Q9Y5F0 798 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 CKAP5Q14008 2032 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 H3BQV1 296 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 CLDN5O00501 218 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 GREM1O60565 184 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 BMP15O95972 392 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 CST3P01034 146 aaPredicted RBP13.87□□□□□ -0.19
HDAC3-213ENST00000492506 ZDHHC11BP0C7U3 371 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 SKILP12757 684 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 PTPN1P18031 435 aaKnown RBP13.87□□□□□ -0.19
HDAC3-213ENST00000492506 YWHAQP27348 245 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 OAS2P29728 719 aaKnown RBP13.87□□□□□ -0.19
HDAC3-213ENST00000492506 IFRD2Q12894 506 aaPredicted RBP13.87□□□□□ -0.19
HDAC3-213ENST00000492506 GRIK2Q13002 908 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 BTBD8Q5XKL5 378 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 TOGARAM2Q6ZUX3 1019 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 TRAPPC11Q7Z392 1133 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 CBWD2Q8IUF1 395 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 SYCP3Q8IZU3 236 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 NUP93Q8N1F7 819 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 NEK11Q8NG66 645 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 SCAMP5Q8TAC9 235 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 NOC3LQ8WTT2 800 aaKnown RBP13.87□□□□□ -0.19
HDAC3-213ENST00000492506 OVCA2Q8WZ82 227 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 MMS19Q96T76 1030 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 ELOVL4Q9GZR5 314 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 TNMDQ9H2S6 317 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 CLSTN2Q9H4D0 955 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 FAM124BQ9H5Z6 455 aaPredicted RBP13.87□□□□□ -0.19
HDAC3-213ENST00000492506 CCSER2Q9H7U1 834 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 CHORDC1Q9UHD1 332 aaPredicted RBP13.87□□□□□ -0.19
HDAC3-213ENST00000492506 PCOLCE2Q9UKZ9 415 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 PCDHB9Q9Y5E1 797 aa13.87□□□□□ -0.19
HDAC3-213ENST00000492506 FAM92AA1XBS5 289 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 PRRT4C9JH25 899 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 PRPF6O94906 941 aaKnown RBP13.86□□□□□ -0.19
HDAC3-213ENST00000492506 TNNC2P02585 160 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 FAM163BP0C2L3 166 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 MAOBP27338 520 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 HOXD13P35453 343 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 PGFP49763 221 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 CORO7P57737 925 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 ALCAMQ13740 583 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 BRD3Q15059 726 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 ANO4Q32M45 955 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 PREPLQ4J6C6 727 aaPredicted RBP13.86□□□□□ -0.19
HDAC3-213ENST00000492506 HECTD3Q5T447 861 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 FOXD4L5Q5VV16 416 aaPredicted RBP13.86□□□□□ -0.19
HDAC3-213ENST00000492506 WDR49Q8IV35 697 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 CHPFQ8IZ52 775 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 PDZD8Q8NEN9 1154 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 ANKRD20A12PQ8NF67 263 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 HNRNPLLQ8WVV9 542 aaKnown RBP13.86□□□□□ -0.19
HDAC3-213ENST00000492506 FOXD4L4Q8WXT5 416 aaPredicted RBP13.86□□□□□ -0.19
HDAC3-213ENST00000492506 DNASE2BQ8WZ79 361 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 ERLEC1Q96DZ1 483 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 MRGPRX1Q96LB2 322 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 KCNK16Q96T55 309 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 TRIM9Q9C026 710 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 SNX25Q9H3E2 840 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 CXorf56Q9H5V9 222 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 ARFGAP3Q9NP61 516 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 SCUBE2Q9NQ36 999 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 TOR4AQ9NXH8 423 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 KIAA1522Q9P206 1035 aaPredicted RBP13.86□□□□□ -0.19
HDAC3-213ENST00000492506 RAXQ9Y2V3 346 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 SH3BP1Q9Y3L3 701 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 RAD54BQ9Y620 910 aa13.86□□□□□ -0.19
HDAC3-213ENST00000492506 ZNF233A6NK53 670 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 KIAA0391O15091 583 aaKnown RBP13.85□□□□□ -0.19
HDAC3-213ENST00000492506 CACNG3O60359 315 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 DKK1O94907 266 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 RTN3O95197 1032 aaPredicted RBP13.85□□□□□ -0.19
HDAC3-213ENST00000492506 TUBP50607 506 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 LRMPQ12912 555 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 MAPK8IP2Q13387 824 aaPredicted RBP13.85□□□□□ -0.19
HDAC3-213ENST00000492506 SURF1Q15526 300 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 GRAMD4Q6IC98 578 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 NUDT18Q6ZVK8 323 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 PAQR9Q6ZVX9 377 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 SV2BQ7L1I2 683 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 RGL4Q8IZJ4 473 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 B3GALNT2Q8NCR0 500 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 GLIS3Q8NEA6 775 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 OR6B3Q8NGW1 331 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 BAHD1Q8TBE0 780 aaPredicted RBP13.85□□□□□ -0.19
HDAC3-213ENST00000492506 FBXO32Q969P5 355 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 IL21RQ9HBE5 538 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 DNAJC17Q9NVM6 304 aaKnown RBP13.85□□□□□ -0.19
HDAC3-213ENST00000492506 DKK4Q9UBT3 224 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 SUSD2Q9UGT4 822 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 APOBEC2Q9Y235 224 aaKnown RBP13.85□□□□□ -0.19
HDAC3-213ENST00000492506 NUMA1Q14980 2115 aa13.85□□□□□ -0.19
HDAC3-213ENST00000492506 TP53BP1Q12888 1972 aaPredicted RBP13.85□□□□□ -0.19
HDAC3-213ENST00000492506 CFAP46Q8IYW2 2715 aa13.84□□□□□ -0.19
HDAC3-213ENST00000492506 A0A087WUV0 522 aaPredicted RBP13.84□□□□□ -0.19
HDAC3-213ENST00000492506 GOLGA6L4A6NEF3 574 aa13.84□□□□□ -0.19
HDAC3-213ENST00000492506 WASH3PC4AMC7 463 aa13.84□□□□□ -0.19
HDAC3-213ENST00000492506 CISD3P0C7P0 127 aa13.84□□□□□ -0.19
HDAC3-213ENST00000492506 IDEP14735 1019 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms