RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 PQLC3Q8N755 202 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 OR6Y1Q8NGX8 325 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 PPP1R14CQ8TAE6 165 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 PIWIL2Q8TC59 973 aaKnown RBP12.63□□□□□ -0.39
COL3A1-206ENST00000487010 NCSTNQ92542 709 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 TMEM176AQ96HP8 235 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 ZNF778Q96MU6 729 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 GORASP1Q9BQQ3 440 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 TRIM56Q9BRZ2 755 aaKnown RBP12.63□□□□□ -0.39
COL3A1-206ENST00000487010 APOL6Q9BWW8 343 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 SPATA16Q9BXB7 569 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 STN1Q9H668 368 aaKnown RBP12.63□□□□□ -0.39
COL3A1-206ENST00000487010 SMYD3Q9H7B4 428 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 MYOZ2Q9NPC6 264 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 DMAP1Q9NPF5 467 aaPredicted RBP12.63□□□□□ -0.39
COL3A1-206ENST00000487010 STK32BQ9NY57 414 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 SIX4Q9UIU6 781 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 DNAJC16Q9Y2G8 782 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 TBC1D30Q9Y2I9 924 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 MAD1L1Q9Y6D9 718 aa12.63□□□□□ -0.39
COL3A1-206ENST00000487010 ARHGAP42A6NI28 874 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 ITM2AO43736 263 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 L1CAMP32004 1257 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 OSTNP61366 133 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 IRX4P78413 519 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 LAMTOR4Q0VGL1 99 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 FSTL1Q12841 308 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 CDO1Q16878 200 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 LIN52Q52LA3 116 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 TEDDM1Q5T9Z0 273 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 IER5Q5VY09 327 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 MBLAC2Q68D91 279 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 MPZL3Q6UWV2 235 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 C4orf22Q6V702 233 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 RASSF3Q86WH2 238 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 ZBTB8OSQ8IWT0 167 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 MPP5Q8N3R9 675 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 DEPDC1BQ8WUY9 529 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 PYDC1Q8WXC3 89 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 CENPKQ9BS16 269 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 PCDHA11Q9Y5I1 949 aa12.62□□□□□ -0.39
COL3A1-206ENST00000487010 CILPO75339 1184 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 CSDE1O75534 798 aaKnown RBP12.61□□□□□ -0.39
COL3A1-206ENST00000487010 LYPLA1O75608 230 aaPredicted RBP12.61□□□□□ -0.39
COL3A1-206ENST00000487010 FGF3P11487 239 aaPredicted RBP12.61□□□□□ -0.39
COL3A1-206ENST00000487010 PROZP22891 400 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 CNTFP26441 200 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 STAT5BP51692 787 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 CUL3Q13618 768 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 SLC9A4Q6AI14 798 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 RNF111Q6ZNA4 994 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 ST13P4Q8IZP2 240 aaPredicted RBP12.61□□□□□ -0.39
COL3A1-206ENST00000487010 TTLL6Q8N841 843 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 RNF149Q8NC42 400 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 PCDH19Q8TAB3 1148 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 UBA3Q8TBC4 463 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 MMP19Q99542 508 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 TEX13BQ9BXU2 312 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 PTPRHQ9HD43 1115 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 GPATCH2LQ9NWQ4 482 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 APOBEC2Q9Y235 224 aaKnown RBP12.61□□□□□ -0.39
COL3A1-206ENST00000487010 SLC4A7Q9Y6M7 1214 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 MAP3K6O95382 1288 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 METTL18O95568 372 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 PIM1P11309 404 aaPredicted RBP12.61□□□□□ -0.39
COL3A1-206ENST00000487010 VDRP11473 427 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 TPSB2P20231 275 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 SLC1A6P48664 564 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 COPAP53621 1224 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 CXCL9Q07325 125 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 ASPHQ12797 758 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 CCNIQ14094 377 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 TPSAB1Q15661 275 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 BOLA3Q53S33 107 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 SFT2D3Q587I9 215 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 RALGPS1Q5JS13 557 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 CFAP157Q5JU67 520 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 FAM160B1Q5W0V3 765 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 OR6B2Q6IFH4 312 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 DPY19L2Q6NUT2 758 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 C16orf46Q6P387 395 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 PGM2L1Q6PCE3 622 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 TSHZ1Q6ZSZ6 1077 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 FAM183BPQ6ZVS7 135 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 MARK2Q7KZI7 788 aaKnown RBP12.61□□□□□ -0.39
COL3A1-206ENST00000487010 NIM1KQ8IY84 436 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 TMEM130Q8N3G9 435 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 POU5F2Q8N7G0 328 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.61□□□□□ -0.39
COL3A1-206ENST00000487010 LRRN4Q8WUT4 740 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 VCX3BQ9H321 246 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 PCDH18Q9HCL0 1135 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 MOCS1Q9NZB8 636 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 ITGA11Q9UKX5 1188 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 EMCNQ9ULC0 261 aa12.61□□□□□ -0.39
COL3A1-206ENST00000487010 SSC5DA1L4H1 1573 aa12.6□□□□□ -0.39
COL3A1-206ENST00000487010 PIK3R2O00459 728 aa12.6□□□□□ -0.39
COL3A1-206ENST00000487010 SIN3BO75182 1162 aa12.6□□□□□ -0.39
COL3A1-206ENST00000487010 FARP2O94887 1054 aaPredicted RBP12.6□□□□□ -0.39
COL3A1-206ENST00000487010 UQCRBP14927 111 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms