RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 PCDHB2Q9Y5E7 798 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 SOCS2O14508 198 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 TLR2O60603 784 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 TMIGD3P0DMS9 266 aaPredicted RBP3.84□□□□□ -1.79
VPS50-216ENST00000484954 PRIM2P49643 509 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 WDR5P61964 334 aaKnown RBP3.84□□□□□ -1.79
VPS50-216ENST00000484954 CCDC15Q0P6D6 951 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 GAB1Q13480 694 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 MZT2AQ6P582 158 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 KRT28Q7Z3Y7 464 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 SDR16C5Q8N3Y7 309 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 ATP11CQ8NB49 1132 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 ZNF548Q8NEK5 533 aaPredicted RBP3.84□□□□□ -1.79
VPS50-216ENST00000484954 CUL5Q93034 780 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 HMCESQ96FZ2 354 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 HIC2Q96JB3 615 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 WDR24Q96S15 920 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 HEY2Q9UBP5 337 aa3.84□□□□□ -1.79
VPS50-216ENST00000484954 SIRT4Q9Y6E7 314 aaPredicted RBP3.84□□□□□ -1.79
VPS50-216ENST00000484954 THAP12O43422 761 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 PARNO95453 639 aaKnown RBP3.83□□□□□ -1.8
VPS50-216ENST00000484954 CBSLP0DN79 551 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 CTSAP10619 480 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 RPL17P18621 184 aaKnown RBP3.83□□□□□ -1.8
VPS50-216ENST00000484954 FGFR2P21802 821 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 MST1P26927 711 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 CBSP35520 551 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 CCT4P50991 539 aaKnown RBP3.83□□□□□ -1.8
VPS50-216ENST00000484954 CASP5P51878 434 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 GPS1Q13098 491 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 RAP1GAP2Q684P5 730 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 KIAA0408Q6ZU52 694 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.83□□□□□ -1.8
VPS50-216ENST00000484954 CCDC33Q8N5R6 958 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 TBCBQ99426 244 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 WACQ9BTA9 647 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 SCNM1Q9BWG6 230 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 ADGRE3Q9BY15 652 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 FOXP1Q9H334 677 aaPredicted RBP3.83□□□□□ -1.8
VPS50-216ENST00000484954 ABHD10Q9NUJ1 306 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 TTC3P53804 2025 aa3.83□□□□□ -1.8
VPS50-216ENST00000484954 ZMYM2Q9UBW7 1377 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 A0A1W2PPC4 97 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 CLCA1A8K7I4 914 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 APAF1O14727 1248 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 INPPL1O15357 1258 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 CNOT3O75175 753 aaKnown RBP3.82□□□□□ -1.8
VPS50-216ENST00000484954 NDST3O95803 873 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 DRD1P21728 446 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 IDUAP35475 653 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 JAK3P52333 1124 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 ID2Q02363 134 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 FHL1Q13642 323 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 LAMB3Q13751 1172 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 KCNJ12Q14500 433 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 PFKFB3Q16875 520 aaPredicted RBP3.82□□□□□ -1.8
VPS50-216ENST00000484954 TMEM196Q5HYL7 178 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 FAM90A2PQ658T7 463 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 RUSC1-AS1Q66K80 236 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 MRPL10Q7Z7H8 261 aaKnown RBP3.82□□□□□ -1.8
VPS50-216ENST00000484954 CCDC28AQ8IWP9 274 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 NGDNQ8NEJ9 315 aaKnown RBP3.82□□□□□ -1.8
VPS50-216ENST00000484954 VCPIP1Q96JH7 1222 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 FCRL5Q96RD9 977 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 CINPQ9BW66 212 aaPredicted RBP3.82□□□□□ -1.8
VPS50-216ENST00000484954 GATA5Q9BWX5 397 aaPredicted RBP3.82□□□□□ -1.8
VPS50-216ENST00000484954 NUAK2Q9H093 628 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 TMEM8AQ9HCN3 771 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 MYO1AQ9UBC5 1043 aa3.82□□□□□ -1.8
VPS50-216ENST00000484954 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.82□□□□□ -1.8
VPS50-216ENST00000484954 SLC22A23A1A5C7 686 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 C2CD4BA6NLJ0 364 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 M0QZQ0 153 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 FOXN3O00409 490 aaPredicted RBP3.81□□□□□ -1.8
VPS50-216ENST00000484954 PRYO14603 147 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 AREL1O15033 823 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 KCNQ3O43525 872 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 PLAUP00749 431 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 PECAM1P16284 738 aaPredicted RBP3.81□□□□□ -1.8
VPS50-216ENST00000484954 TACR3P29371 465 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 HOXA7P31268 230 aaPredicted RBP3.81□□□□□ -1.8
VPS50-216ENST00000484954 STT3AP46977 705 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 PLCD1P51178 756 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 FOXG1P55316 489 aaPredicted RBP3.81□□□□□ -1.8
VPS50-216ENST00000484954 SRSF1Q07955 248 aaKnown RBP eCLIP3.81□□□□□ -1.8
VPS50-216ENST00000484954 BFSP2Q13515 415 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 LEXMQ3ZCV2 418 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 SLC9C1Q4G0N8 1177 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 ARHGAP15Q53QZ3 475 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 FAXCQ5TGI0 409 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 DEF8Q6ZN54 512 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 ANKRD13BQ86YJ7 626 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 C16orf71Q8IYS4 520 aaPredicted RBP3.81□□□□□ -1.8
VPS50-216ENST00000484954 TTC17Q96AE7 1141 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 TRMT61AQ96FX7 289 aaKnown RBP3.81□□□□□ -1.8
VPS50-216ENST00000484954 GDF15Q99988 308 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 PCDHAC1Q9H158 963 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 ZBTB26Q9HCK0 441 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 ARL8BQ9NVJ2 186 aa3.81□□□□□ -1.8
VPS50-216ENST00000484954 PI4KBQ9UBF8 816 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms