RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NELFCDQ8IXH7 590 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 TMEM86AQ8N2M4 240 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 PDCL2Q8N4E4 241 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 DTWD2Q8NBA8 298 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 PJA1Q8NG27 643 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 SPATA18Q8TC71 538 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 SPPL2BQ8TCT7 592 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 DEPDC1BQ8WUY9 529 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 DNASE1L2Q92874 299 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 SMARCD2Q92925 531 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 PSMG2Q969U7 264 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 E2F7Q96AV8 911 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 TRMT61BQ9BVS5 477 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 LRRC3Q9BY71 257 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 BLZF1Q9H2G9 400 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 TRPV4Q9HBA0 871 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 AGPAT3Q9NRZ7 376 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 FAM86C1Q9NVL1 165 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 GDAP2Q9NXN4 497 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 CGNQ9P2M7 1197 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 USP25Q9UHP3 1055 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 SMG5Q9UPR3 1016 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 MAPK8IP1Q9UQF2 711 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 ATP6V1DQ9Y5K8 247 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 CACNA1IQ9P0X4 2223 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 COL4A2P08572 1712 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 ANAPC1Q9H1A4 1944 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 KIF26AQ9ULI4 1882 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 MYH10P35580 1976 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 KANSL1LA0AUZ9 987 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 TGFB1I1O43294 461 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 GADD45BO75293 160 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 PRPF40AO75400 957 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 SOAT2O75908 522 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 MYL1P05976 194 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 DCNP07585 359 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 HAPLN1P10915 354 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 PFKFB1P16118 471 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 GJA1P17302 382 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 PSMC3P17980 439 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 CMA1P23946 247 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 CASP1P29466 404 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 CDC25CP30307 473 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 LHX1P48742 406 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 MYL7Q01449 175 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 CUL4BQ13620 913 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 ANGPT1Q15389 498 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 TAF12Q16514 161 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 SNRNP35Q16560 246 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 NFE2Q16621 373 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 KNOP1Q1ED39 458 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 BMT2Q1RMZ1 405 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 ARHGAP15Q53QZ3 475 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 LMBRD2Q68DH5 695 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 TPRG1Q6ZUI0 275 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 C22orf34Q6ZV56 151 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 LRRTM3Q86VH5 581 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 WDR49Q8IV35 697 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 C12orf56Q8IXR9 622 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 GRAMD1CQ8IYS0 662 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 ADGRF2Q8IZF7 708 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 XXYLT1Q8NBI6 393 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 OR5B17Q8NGF7 314 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 CXorf38Q8TB03 319 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 EPS8L3Q8TE67 593 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 LEO1Q8WVC0 666 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 SCFD1Q8WVM8 642 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 PAGE5Q96GU1 130 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 SPATA32Q96LK8 384 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 ZSWIM3Q96MP5 696 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 GCNAQ96QF7 691 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 FNBP1Q96RU3 617 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 ACBD6Q9BR61 282 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 DDX23Q9BUQ8 820 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 OSBPL6Q9BZF3 934 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 PLA2G2FQ9BZM2 168 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 FOXQ1Q9C009 403 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 BRD9Q9H8M2 597 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 ZNF334Q9HCZ1 680 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 SLC39A2Q9NP94 309 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 EXOC1Q9NV70 894 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 INTS13Q9NVM9 706 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 DDX43Q9NXZ2 648 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 DLGAP2Q9P1A6 1054 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 SIX4Q9UIU6 781 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 L1RE1Q9UN81 338 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 MRPS17Q9Y2R5 130 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 PCDHB5Q9Y5E4 795 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 SNX9Q9Y5X1 595 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 F5P12259 2224 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 COL4A3Q01955 1670 aa7.28□□□□□ -1.24
CCDC88A-213ENST00000476903 PTPRJQ12913 1337 aa7.27□□□□□ -1.24
CCDC88A-213ENST00000476903 USP34Q70CQ2 3546 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 HELZP42694 1942 aaKnown RBP7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 A0A1B0GVL5 298 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 HEPACAM2A8MVW5 462 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 PROB1E7EW31 1015 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 ZNF263O14978 683 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 CLIC2O15247 247 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 NCAM2O15394 837 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms