RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 MMS19Q96T76 1030 aa5.73□□□□□ -1.49
PTCD3-211ENST00000476215 EIF3CQ99613 913 aaKnown RBP5.73□□□□□ -1.49
PTCD3-211ENST00000476215 THAP7Q9BT49 309 aaPredicted RBP5.73□□□□□ -1.49
PTCD3-211ENST00000476215 KATNAL1Q9BW62 490 aa5.73□□□□□ -1.49
PTCD3-211ENST00000476215 CIPCQ9C0C6 399 aa5.73□□□□□ -1.49
PTCD3-211ENST00000476215 FSCN3Q9NQT6 498 aa5.73□□□□□ -1.49
PTCD3-211ENST00000476215 TFCP2L1Q9NZI6 479 aa5.73□□□□□ -1.49
PTCD3-211ENST00000476215 ZNF213O14771 459 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 TAF5LO75529 589 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 ITGA2BP08514 1039 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 ZNF37AP17032 561 aaPredicted RBP5.72□□□□□ -1.49
PTCD3-211ENST00000476215 KLRK1P26718 216 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 AKT1P31749 480 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 SOX10P56693 466 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 TXNL4AP83876 142 aaKnown RBP5.72□□□□□ -1.49
PTCD3-211ENST00000476215 GORABQ5T7V8 394 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 RINT1Q6NUQ1 792 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 EXOC8Q8IYI6 725 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 NRSN1Q8IZ57 195 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 PNPLA1Q8N8W4 532 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 MAGEH1Q9H213 219 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 USP29Q9HBJ7 922 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 SH3BP4Q9P0V3 963 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 GRHPRQ9UBQ7 328 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 ADAM21Q9UKJ8 722 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 RIPOR2Q9Y4F9 1068 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 SPATA31A6Q5VVP1 1343 aa5.72□□□□□ -1.49
PTCD3-211ENST00000476215 FNDC1Q4ZHG4 1894 aaPredicted RBP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 MASP2O00187 686 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 DHHO43323 396 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 C1RP00736 705 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 GYS1P13807 737 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 HALP42357 657 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 COPB1P53618 953 aaKnown RBP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 SEMA3BQ13214 749 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 KCNJ12Q14500 433 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 CCDC144NLQ6NUI1 221 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 PIK3AP1Q6ZUJ8 805 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 KRT27Q7Z3Y8 459 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 SMC5Q8IY18 1101 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 CLASRPQ8N2M8 674 aaKnown RBP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 FAM71DQ8N9W8 422 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 TERB1Q8NA31 727 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 WDR60Q8WVS4 1066 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 EID2BQ96D98 161 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 DAZAP1Q96EP5 407 aaKnown RBP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 PRR11Q96HE9 360 aaPredicted RBP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 PAGR1Q9BTK6 254 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 CINPQ9BW66 212 aaPredicted RBP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 TP63Q9H3D4 680 aaPredicted RBP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 MYH16Q9H6N6 1097 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 ARPP21Q9UBL0 812 aaPredicted RBP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 PCDHB2Q9Y5E7 798 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 WNT6Q9Y6F9 365 aa5.71□□□□□ -1.5
PTCD3-211ENST00000476215 MORC2Q9Y6X9 1032 aaPredicted RBP5.71□□□□□ -1.5
PTCD3-211ENST00000476215 JTBO76095 146 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 GRK6P43250 576 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 HOXA4Q00056 320 aaPredicted RBP5.7□□□□□ -1.5
PTCD3-211ENST00000476215 DNASE1L3Q13609 305 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 DHX8Q14562 1220 aaKnown RBP5.7□□□□□ -1.5
PTCD3-211ENST00000476215 FAM90A2PQ658T7 463 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 SULT6B1Q6IMI4 303 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 LIN54Q6MZP7 749 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 MSANTD2Q6P1R3 559 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 KLHL17Q6TDP4 642 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 TRIM72Q6ZMU5 477 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 ANKRD42Q8N9B4 389 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 OR1N1Q8NGS0 311 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 OVCA2Q8WZ82 227 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 SARAFQ96BY9 339 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 HERPUD2Q9BSE4 406 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 SORBS1Q9BX66 1292 aaKnown RBP5.7□□□□□ -1.5
PTCD3-211ENST00000476215 MYLK2Q9H1R3 596 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 SAP30LQ9HAJ7 183 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 AGO4Q9HCK5 861 aaKnown RBP5.7□□□□□ -1.5
PTCD3-211ENST00000476215 VPS45Q9NRW7 570 aa5.7□□□□□ -1.5
PTCD3-211ENST00000476215 HERC5Q9UII4 1024 aaKnown RBP5.7□□□□□ -1.5
PTCD3-211ENST00000476215 TARM1B6A8C7 271 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 CTIFO43310 598 aaKnown RBP5.69□□□□□ -1.5
PTCD3-211ENST00000476215 RBMXL2O75526 392 aaKnown RBP5.69□□□□□ -1.5
PTCD3-211ENST00000476215 ACTL6BO94805 426 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 CER1O95813 267 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 TMIGD3P0DMS9 266 aaPredicted RBP5.69□□□□□ -1.5
PTCD3-211ENST00000476215 ALADP13716 330 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 RENBPP51606 427 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 POLE2P56282 527 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 GPC5P78333 572 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 MRPS21P82921 87 aaKnown RBP5.69□□□□□ -1.5
PTCD3-211ENST00000476215 CCDC15Q0P6D6 951 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 FOXO1Q12778 655 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 BTBD16Q32M84 506 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 ATPAF1Q5TC12 328 aaPredicted RBP5.69□□□□□ -1.5
PTCD3-211ENST00000476215 SERPINA13PQ6UXR4 307 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 BCDIN3DQ7Z5W3 292 aaKnown RBP5.69□□□□□ -1.5
PTCD3-211ENST00000476215 CCDC117Q8IWD4 279 aaPredicted RBP5.69□□□□□ -1.5
PTCD3-211ENST00000476215 NKAPQ8N5F7 415 aaKnown RBP5.69□□□□□ -1.5
PTCD3-211ENST00000476215 C12orf76Q8N812 135 aaPredicted RBP5.69□□□□□ -1.5
PTCD3-211ENST00000476215 SPATA5Q8NB90 893 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 REPS1Q96D71 796 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms