RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 PCDH18Q9HCL0 1135 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.34□□□□□ -0.27
VPS13D-205ENST00000473099 ZMYND8Q9ULU4 1186 aaPredicted RBP13.34□□□□□ -0.27
VPS13D-205ENST00000473099 FZD10Q9ULW2 581 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 HELZP42694 1942 aaKnown RBP13.34□□□□□ -0.27
VPS13D-205ENST00000473099 MYO18AQ92614 2054 aaKnown RBP13.33□□□□□ -0.27
VPS13D-205ENST00000473099 TCRBV7S2A1N4TA0A589 114 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 H3BRJ5 948 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 APOC4-APOC2K7ER74 178 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 IRAK2O43187 625 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 ZNF189O75820 626 aaPredicted RBP13.33□□□□□ -0.28
VPS13D-205ENST00000473099 GAS8O95995 478 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 IGLV3-25P01717 112 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 APOC2P02655 101 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 RB1P06400 928 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 LINC00271P0C7V0 271 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 SLC2A3P11169 496 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 TFE3P19532 575 aaPredicted RBP13.33□□□□□ -0.28
VPS13D-205ENST00000473099 TGM2P21980 687 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 BMPR1AP36894 532 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 ALDH1A3P47895 512 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 PPP3CCP48454 512 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 CXCR3P49682 368 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 CDR1P51861 262 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 IFRD2Q12894 506 aaPredicted RBP13.33□□□□□ -0.28
VPS13D-205ENST00000473099 NME3Q13232 169 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 CUL1Q13616 776 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 VEPH1Q14D04 833 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 ACBD5Q5T8D3 534 aaPredicted RBP13.33□□□□□ -0.28
VPS13D-205ENST00000473099 TADA2BQ86TJ2 420 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 FAM131BQ86XD5 332 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 RFX6Q8HWS3 928 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 TCEAL8Q8IYN2 117 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 TTC9BQ8N6N2 239 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 ATL2Q8NHH9 583 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 CCHCR1Q8TD31 782 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 DQX1Q8TE96 717 aaKnown RBP13.33□□□□□ -0.28
VPS13D-205ENST00000473099 FAF2Q96CS3 445 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 RNF157Q96PX1 679 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 PNKPQ96T60 521 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 FAM129AQ9BZQ8 928 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 UBE2OQ9C0C9 1292 aaKnown RBP13.33□□□□□ -0.28
VPS13D-205ENST00000473099 DHX35Q9H5Z1 703 aaKnown RBP13.33□□□□□ -0.28
VPS13D-205ENST00000473099 WDR6Q9NNW5 1121 aaKnown RBP13.33□□□□□ -0.28
VPS13D-205ENST00000473099 FAM114A2Q9NRY5 505 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 PIGVQ9NUD9 493 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 AMACRQ9UHK6 382 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 FBXW11Q9UKB1 542 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 DRG1Q9Y295 367 aaKnown RBP13.33□□□□□ -0.28
VPS13D-205ENST00000473099 SLC27A5Q9Y2P5 690 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 NR2E1Q9Y466 385 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 IRAK3Q9Y616 596 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 ATG2AQ2TAZ0 1938 aa13.33□□□□□ -0.28
VPS13D-205ENST00000473099 A0A1W2PQH9 124 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 SLC38A8A6NNN8 435 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 NDC80O14777 642 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 APOL1O14791 398 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 ADAM12O43184 909 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 CST8O60676 142 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 LILRB3O75022 631 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 ECEL1O95672 775 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 C1RP00736 705 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 ADH1AP07327 375 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 KRT10P13645 584 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 RPL17P18621 184 aaKnown RBP13.32□□□□□ -0.28
VPS13D-205ENST00000473099 L1CAMP32004 1257 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 HTR7P34969 479 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 CTNNB1P35222 781 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 ADRA1BP35368 520 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 GPR15P49685 360 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 KPNA1P52294 538 aaPredicted RBP13.32□□□□□ -0.28
VPS13D-205ENST00000473099 DRG2P55039 364 aaKnown RBP13.32□□□□□ -0.28
VPS13D-205ENST00000473099 PPP2R5DQ14738 602 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 ANKRD20A8PQ5CZ79 823 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 BZW1Q7L1Q6 419 aaKnown RBP13.32□□□□□ -0.28
VPS13D-205ENST00000473099 RTL10Q7L3V2 364 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 SCD5Q86SK9 330 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 TAC4Q86UU9 113 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 ZDHHC14Q8IZN3 488 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 CCDC185Q8N715 623 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 KLHL23Q8NBE8 558 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 SEC14L1Q92503 715 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 EDEM1Q92611 657 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 ACSF2Q96CM8 615 aaPredicted RBP13.32□□□□□ -0.28
VPS13D-205ENST00000473099 TRMT2BQ96GJ1 504 aaKnown RBP13.32□□□□□ -0.28
VPS13D-205ENST00000473099 HERPUD2Q9BSE4 406 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 EMILIN2Q9BXX0 1053 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 ADAM33Q9BZ11 813 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 CRISPLD1Q9H336 500 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 WDCPQ9H6R7 721 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 CYP4F11Q9HBI6 524 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 ARFGAP3Q9NP61 516 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 GDF3Q9NR23 364 aa13.32□□□□□ -0.28
VPS13D-205ENST00000473099 UXTQ9UBK9 157 aaPredicted RBP13.32□□□□□ -0.28
VPS13D-205ENST00000473099 DMGDHQ9UI17 866 aaKnown RBP13.32□□□□□ -0.28
VPS13D-205ENST00000473099 BHMG1C9JSJ3 638 aaPredicted RBP13.31□□□□□ -0.28
VPS13D-205ENST00000473099 C5orf67F2Z3F1 127 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 PRRG1O14668 218 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 MCF2LO15068 1137 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 TTI1O43156 1089 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms