RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 TALDO1P37837 337 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 PDX1P52945 283 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 THOC7Q6I9Y2 204 aaKnown RBP13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 ZCCHC8Q6NZY4 707 aaKnown RBP13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 DET1Q7L5Y6 550 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 TRPM8Q7Z2W7 1104 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 ADGRG1Q9Y653 693 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 RP1L1Q8IWN7 2480 aaPredicted RBP13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 TRIM49D1C9J1S8 452 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 RGL2O15211 777 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 GUCY1B2O75343 617 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 THOP1P52888 689 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 C16orf59Q7L2K0 433 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SLC13A5Q86YT5 568 aaPredicted RBP13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 FMR1NBQ8N0W7 255 aaPredicted RBP13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 NEDD1Q8NHV4 660 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 TBCDQ9BTW9 1192 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 OSBPL3Q9H4L5 887 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 NCKAP1Q9Y2A7 1128 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 MYMKA6NI61 221 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 PDHA2P29803 388 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 CHRNB3Q05901 458 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 NDUFAF6Q330K2 333 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 FGD3Q5JSP0 725 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 FAM171A1Q5VUB5 890 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 C9orf131Q5VYM1 1079 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 DNAJC14Q6Y2X3 702 aaPredicted RBP13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 EFL1Q7Z2Z2 1120 aaKnown RBP13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SLC9A6Q92581 669 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 USP7Q93009 1102 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 CGRRF1Q99675 332 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 NIF3L1Q9GZT8 377 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 RNF19AQ9NV58 838 aa13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 USP15Q9Y4E8 981 aaPredicted RBP13.6□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 PDHBP11177 359 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 AMD1P17707 334 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 HERC6Q8IVU3 1022 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 BRSK2Q8IWQ3 736 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 TRIT1Q9H3H1 467 aaKnown RBP13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SERHL2Q9H4I8 314 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 VCPKMTQ9H867 229 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 RMND5AQ9H871 391 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SERHLQ9NQF3 203 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 TPD52L2O43399 206 aaKnown RBP13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 IFNA16P05015 189 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 ATP6AP1LQ52LC2 224 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 STRA8Q7Z7C7 330 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 VPS35Q96QK1 796 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 GPATCH2LQ9NWQ4 482 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 OR1E1P30953 314 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 CAV3P56539 151 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 NFYCQ13952 458 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 CRYMQ14894 314 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 NSUN4Q96CB9 384 aaKnown RBP13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SEPHS2Q99611 448 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 MXRA8Q9BRK3 442 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 PDGFCQ9NRA1 345 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 STOML2Q9UJZ1 356 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 TRIM17Q9Y577 477 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SNX13Q9Y5W8 968 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 LYVE1Q9Y5Y7 322 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 EML3Q32P44 896 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 ADAM32Q8TC27 787 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 RHOBTB2Q9BYZ6 727 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SAC3D1A6NKF1 404 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 CSF1RP07333 972 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 DPEP1P16444 411 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 RFC5P40937 340 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 CSHL1Q14406 222 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 CYP20A1Q6UW02 462 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 TRAPPC5Q8IUR0 188 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 ELMO3Q96BJ8 720 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 CELF6Q96J87 481 aaKnown RBP13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 BTN3A2P78410 334 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 WDR24Q96S15 920 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 PAIP1Q9H074 479 aaKnown RBP13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 PCDHGB3Q9Y5G1 929 aa13.59□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 JCHAINP01591 159 aa13.58□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 ITIH2P19823 946 aa13.58□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 BCAP31P51572 246 aa13.58□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SCAIQ8N9R8 606 aa13.58□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 PPP1R13LQ8WUF5 828 aa13.58□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SEC16BQ96JE7 1060 aa13.58□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.58□□□□□ -0.23
NPHP3-ACAD11-201ENST00000471702 SLC2A4P14672 509 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 ACAT1P24752 427 aaKnown RBP13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 CCT8P50990 548 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 EFCAB6Q5THR3 1501 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 LBPP18428 481 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 PNPLA4P41247 253 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 OTUD4Q01804 1114 aaKnown RBP13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 SYDE1Q6ZW31 735 aaPredicted RBP13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 PMM1Q92871 262 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 TIPINQ9BVW5 301 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 OR7A10O76100 309 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 GARTP22102 1010 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 LSP1P33241 339 aa13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 TRAP1Q12931 704 aaKnown RBP13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 OTUD3Q5T2D3 398 aaPredicted RBP13.58□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 ATG4AQ8WYN0 398 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms