RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 DPYSL4O14531 572 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 AMHP03971 560 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 RPSAP08865 295 aaKnown RBP19.78■□□□□ 0.76
VIM-203ENST00000469543 CCNB1P14635 433 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 ETV4P43268 484 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 IRX4P78413 519 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 ADIGQ0VDE8 80 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 SETDB1Q15047 1291 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 SYPL2Q5VXT5 272 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 PIGZQ86VD9 579 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 DEFB106AQ8N104 65 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 LBHD1Q9BQE6 289 aaPredicted RBP19.78■□□□□ 0.76
VIM-203ENST00000469543 HMX2A2RU54 273 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 MDM4O15151 490 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 TGM2P21980 687 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 GMPRP36959 345 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 SNX17Q15036 470 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 OSTM1Q86WC4 334 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 NT5DC4Q86YG4 428 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 PLCD3Q8N3E9 789 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 KLC2Q9H0B6 622 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 FETUBQ9UGM5 382 aa19.78■□□□□ 0.76
VIM-203ENST00000469543 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.77■□□□□ 0.76
VIM-203ENST00000469543 IQANK1A0A1B0GTG1 560 aa19.77■□□□□ 0.76
VIM-203ENST00000469543 BCLAF3A2AJT9 711 aaKnown RBP19.77■□□□□ 0.76
VIM-203ENST00000469543 VAV1P15498 845 aa19.77■□□□□ 0.76
VIM-203ENST00000469543 BST2Q10589 180 aaKnown RBP19.77■□□□□ 0.76
VIM-203ENST00000469543 NME3Q13232 169 aa19.77■□□□□ 0.76
VIM-203ENST00000469543 DPYSL2Q16555 572 aa19.77■□□□□ 0.76
VIM-203ENST00000469543 HFE2Q6ZVN8 426 aa19.77■□□□□ 0.76
VIM-203ENST00000469543 TEKT4Q8WW24 435 aa19.77■□□□□ 0.76
VIM-203ENST00000469543 SLC7A6OSQ96CW6 309 aaPredicted RBP19.77■□□□□ 0.76
VIM-203ENST00000469543 L3MBTL3Q96JM7 780 aaPredicted RBP19.77■□□□□ 0.76
VIM-203ENST00000469543 SIGLEC10Q96LC7 697 aa19.77■□□□□ 0.76
VIM-203ENST00000469543 SRPK1Q96SB4 655 aaKnown RBP19.77■□□□□ 0.76
VIM-203ENST00000469543 ZNF670Q9BS34 389 aa19.77■□□□□ 0.76
VIM-203ENST00000469543 CNTN3Q9P232 1028 aa19.77■□□□□ 0.76
VIM-203ENST00000469543 LOC102724159A0A0B4J2E5 919 aa19.77■□□□□ 0.75
VIM-203ENST00000469543 CCDC195A0A1B0GUA6 201 aa19.77■□□□□ 0.75
VIM-203ENST00000469543 PWP2Q15269 919 aaKnown RBP19.77■□□□□ 0.75
VIM-203ENST00000469543 NCBP2-AS2Q69YL0 99 aa19.77■□□□□ 0.75
VIM-203ENST00000469543 RNF169Q8NCN4 708 aa19.77■□□□□ 0.75
VIM-203ENST00000469543 NDC80O14777 642 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 CREB3O43889 395 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 LILRA4P59901 499 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 MRPS5P82675 430 aaKnown RBP19.76■□□□□ 0.75
VIM-203ENST00000469543 STILQ15468 1287 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 KIAA0319Q5VV43 1072 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 SLC26A9Q7LBE3 791 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 PLEKHH3Q7Z736 793 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 SLC26A11Q86WA9 606 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 APPL2Q8NEU8 664 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 RTP4Q96DX8 246 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 PLCD4Q9BRC7 762 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 SNX25Q9H3E2 840 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 ZSWIM8A7E2V4 1837 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.76■□□□□ 0.75
VIM-203ENST00000469543 HOXD8P13378 290 aaPredicted RBP19.76■□□□□ 0.75
VIM-203ENST00000469543 NEK3P51956 506 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 UBXN11Q5T124 520 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 TTC7BQ86TV6 843 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 VPS52Q8N1B4 723 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 LRRC52Q8N7C0 313 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 PDCD7Q8N8D1 485 aaKnown RBP19.76■□□□□ 0.75
VIM-203ENST00000469543 CENPIQ92674 756 aaPredicted RBP19.76■□□□□ 0.75
VIM-203ENST00000469543 TSSK1BQ9BXA7 367 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 KCNK13Q9HB14 408 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 SEPT10Q9P0V9 454 aa19.76■□□□□ 0.75
VIM-203ENST00000469543 MAGED2Q9UNF1 606 aaPredicted RBP19.76■□□□□ 0.75
VIM-203ENST00000469543 MRPL42Q9Y6G3 142 aaKnown RBP19.76■□□□□ 0.75
VIM-203ENST00000469543 NRCAMQ92823 1304 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 FAM237BA0A1B0GVD1 139 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 CFAP69A5D8W1 941 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 TM9SF1O15321 606 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 EPHB2P29323 1055 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 GTF2A2P52657 109 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 SLC45A4Q5BKX6 768 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 IQSEC1Q6DN90 963 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 CASC4Q6P4E1 433 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 CES3Q6UWW8 571 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 ARMC2Q8NEN0 867 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 PHACTR1Q9C0D0 580 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 VPS11Q9H270 941 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 PPCSQ9HAB8 311 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 HEY2Q9UBP5 337 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 UBQLN1Q9UMX0 589 aaKnown RBP19.75■□□□□ 0.75
VIM-203ENST00000469543 RFPL1O75677 317 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 F2P00734 622 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 BCAT1P54687 386 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 WSCD1Q658N2 575 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 TLK2Q86UE8 772 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 KIRREL3Q8IZU9 778 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 CRYBG2Q8N1P7 616 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 APOPT1Q96IL0 206 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 KCNK16Q96T55 309 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 C20orf27Q9GZN8 174 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 SSU72Q9NP77 194 aaKnown RBP19.75■□□□□ 0.75
VIM-203ENST00000469543 ANLNQ9NQW6 1124 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 MORF4L1Q9UBU8 362 aa19.75■□□□□ 0.75
VIM-203ENST00000469543 IPPQ9Y573 584 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms