RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 C1orf74Q96LT6 269 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 RIPOR3Q96MK2 946 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 SDF4Q9BRK5 362 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 CCDC68Q9H2F9 335 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 WASH6PQ9NQA3 447 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 ITM2CQ9NQX7 267 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 JKAMPQ9P055 326 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 NEU2Q9Y3R4 380 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 N6AMT1Q9Y5N5 214 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 A0A087WV62 115 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 KLHL33A6NCF5 533 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 WIPF3A6NGB9 483 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 TISP43B9A030 160 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 B9A039 149 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 CASQ2O14958 399 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 SPTLC2O15270 562 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 NEMFO60524 1076 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 ZBED4O75132 1171 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 ATP1A3P13637 1013 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 WT1P19544 449 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 C5AR1P21730 350 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 MXI1P50539 228 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 HNRNPMP52272 730 aaKnown RBP eCLIP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC12A2P55011 1212 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 DRG2P55039 364 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 UBXN1Q04323 297 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 PIGFQ07326 219 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 IFIT5Q13325 482 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 SEMA5AQ13591 1074 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 BLMHQ13867 455 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 EIF4A2Q14240 407 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 PTPRRQ15256 657 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 TAF12Q16514 161 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 RABL6Q3YEC7 729 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 FAM153CQ494X1 144 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 C10orf76Q5T2E6 689 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 IFIT1BQ5T764 474 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC30A6Q6NXT4 461 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 TAPT1Q6NXT6 567 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC30A10Q6XR72 485 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 RUFY3Q7L099 469 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 PTF1AQ7RTS3 328 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 KRT74Q7RTS7 529 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 ESX1Q8N693 406 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 TRIML1Q8N9V2 468 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 ANKRD52Q8NB46 1076 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 ZMIZ2Q8NF64 920 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 IL17RDQ8NFM7 739 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 HASPINQ8TF76 798 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 JADE3Q92613 823 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 KAT5Q92993 513 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 LRIG1Q96JA1 1093 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 SPATA17Q96L03 361 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 NEK1Q96PY6 1258 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 HAPLN3Q96S86 360 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 TCHPQ9BT92 498 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 TXLNGYQ9BZA5 131 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 C2orf40Q9H1Z8 148 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 GRPEL1Q9HAV7 217 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 ZNHIT6Q9NWK9 470 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 CDC23Q9UJX2 597 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 ZHX1Q9UKY1 873 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 C19orf53Q9UNZ5 99 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 CEP83Q9Y592 693 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 TMEM94Q12767 1356 aa5.27□□□□□ -1.57
CCDC88A-210ENST00000468534 A0A087X0M5 115 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 CCDC196A0A1B0GTZ2 297 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 A0A1B0GX30 115 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 CCDC69A6NI79 296 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 A6NLC8 198 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 VWC2LB2RUY7 222 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 NDC80O14777 642 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC43A1O75387 559 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 GOSR1O95249 250 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 TGDSO95455 350 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 RHOP08100 348 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 POU2F2P09086 479 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 MYCLP12524 364 aaPredicted RBP5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 EEF2P13639 858 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 HNF4AP41235 474 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 LIFRP42702 1097 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 WASP42768 502 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 CLCN2P51788 898 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC16A1P53985 500 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 AP1B1Q10567 949 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 PPA1Q15181 289 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 ANKRD1Q15327 319 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 SRSF7Q16629 238 aaKnown RBP eCLIP5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 C3orf36Q3SXR2 165 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 ANKDD1AQ495B1 522 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 MMEL1Q495T6 779 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 TMEM119Q4V9L6 283 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 MICALCLQ6ZW33 695 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 ZER1Q7Z7L7 766 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 LRRC71Q8N4P6 559 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 CAMKK1Q8N5S9 505 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 FAM156AQ8NDB6 213 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 C1orf162Q8NEQ5 155 aaPredicted RBP5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 RUFY2Q8WXA3 655 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 ANKS1AQ92625 1134 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms