RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 RIN3Q8TB24 985 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 OVCA2Q8WZ82 227 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 MRPS31Q92665 395 aaKnown RBP18.3■□□□□ 0.52
CPSF4-209ENST00000465132 GOLGA1Q92805 767 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 CCDC42Q96M95 316 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 CNTNAP3BQ96NU0 1288 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 CNTNAP3Q9BZ76 1288 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 HAUS4Q9H6D7 363 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 LUC7LQ9NQ29 371 aaKnown RBP18.3■□□□□ 0.52
CPSF4-209ENST00000465132 KIF26AQ9ULI4 1882 aaPredicted RBP18.29■□□□□ 0.52
CPSF4-209ENST00000465132 SSU72P8A0A1W2PR75 194 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 FOXD2O60548 495 aaPredicted RBP18.29■□□□□ 0.52
CPSF4-209ENST00000465132 IPO7O95373 1038 aaKnown RBP18.29■□□□□ 0.52
CPSF4-209ENST00000465132 YWHAQP27348 245 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 CDH5P33151 784 aaPredicted RBP18.29■□□□□ 0.52
CPSF4-209ENST00000465132 GPD2P43304 727 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 PSEN1P49768 467 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 ZNF268Q14587 947 aaPredicted RBP18.29■□□□□ 0.52
CPSF4-209ENST00000465132 PKDCCQ504Y2 493 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 TAF3Q5VWG9 929 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 TTC30AQ86WT1 665 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 ZDHHC17Q8IUH5 632 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 UBA3Q8TBC4 463 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 SLC35F5Q8WV83 523 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 DDX1Q92499 740 aaKnown RBP18.29■□□□□ 0.52
CPSF4-209ENST00000465132 TRIM11Q96F44 468 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 SMOQ99835 787 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 STRIP2Q9ULQ0 834 aa18.29■□□□□ 0.52
CPSF4-209ENST00000465132 SPTBN2O15020 2390 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 GDF9O60383 454 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 ATG13O75143 517 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 TADA3O75528 432 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 MMEP08473 750 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 GZMAP12544 262 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 ARSAP15289 507 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 PXNP49023 591 aaPredicted RBP18.28■□□□□ 0.52
CPSF4-209ENST00000465132 AMPD2Q01433 879 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 PDGFRLQ15198 375 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 CC2D1AQ6P1N0 951 aaPredicted RBP18.28■□□□□ 0.52
CPSF4-209ENST00000465132 TADA2BQ86TJ2 420 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 PIGZQ86VD9 579 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 ERICH1Q86X53 443 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 TMTC1Q8IUR5 882 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 SCML4Q8N228 414 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 SPC24Q8NBT2 197 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 GAB3Q8WWW8 586 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 MYRFLQ96LU7 910 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 KCNK16Q96T55 309 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.28■□□□□ 0.52
CPSF4-209ENST00000465132 CNGB3Q9NQW8 809 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 ST7Q9NRC1 585 aa18.28■□□□□ 0.52
CPSF4-209ENST00000465132 CCDC163A0A0D9SF12 145 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 AKR1B10O60218 316 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 EGFP01133 1207 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 CALB1P05937 261 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 ADRB1P08588 477 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 SLC5A3P53794 718 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 FMO1Q01740 532 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 DENND1BQ6P3S1 775 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 CCDC170Q8IYT3 715 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 TXLNBQ8N3L3 684 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 TC2NQ8N9U0 490 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 C1orf131Q8NDD1 294 aaKnown RBP18.27■□□□□ 0.52
CPSF4-209ENST00000465132 CCDC112Q8NEF3 446 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 IRGQQ8WZA9 623 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 VCPIP1Q96JH7 1222 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 PPP1R13BQ96KQ4 1090 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 CDK5RAP1Q96SZ6 601 aaKnown RBP18.27■□□□□ 0.52
CPSF4-209ENST00000465132 ZSWIM1Q9BR11 485 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 TTLL2Q9BWV7 592 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 FBRSL1Q9HCM7 1045 aaKnown RBP18.27■□□□□ 0.52
CPSF4-209ENST00000465132 ACP6Q9NPH0 428 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 TMEM51Q9NW97 253 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 TRPM5Q9NZQ8 1165 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 WDR35Q9P2L0 1181 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 SLC8A2Q9UPR5 921 aa18.27■□□□□ 0.52
CPSF4-209ENST00000465132 RNF40O75150 1001 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 RPP40O75818 363 aaKnown RBP18.26■□□□□ 0.51
CPSF4-209ENST00000465132 ZBED1O96006 694 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 CYP1A1P04798 512 aaPredicted RBP18.26■□□□□ 0.51
CPSF4-209ENST00000465132 PFKLP17858 780 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 CYLC1P35663 651 aaPredicted RBP18.26■□□□□ 0.51
CPSF4-209ENST00000465132 GALK1P51570 392 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 TKTL1P51854 596 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 PDCLQ13371 301 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 MAPK8IP2Q13387 824 aaPredicted RBP18.26■□□□□ 0.51
CPSF4-209ENST00000465132 CCDC142Q17RM4 750 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 CLEC16AQ2KHT3 1053 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 PPM1JQ5JR12 505 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 RAB41Q5JT25 222 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 C10orf76Q5T2E6 689 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 TOGARAM2Q6ZUX3 1019 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 TMEM110Q86TL2 294 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 SLC20A1Q8WUM9 679 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 FBXO32Q969P5 355 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 LOXL4Q96JB6 756 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 P2RY13Q9BPV8 354 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 SLC4A5Q9BY07 1137 aa18.26■□□□□ 0.51
CPSF4-209ENST00000465132 TLR8Q9NR97 1041 aaKnown RBP18.26■□□□□ 0.51
CPSF4-209ENST00000465132 SCML2Q9UQR0 700 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms