RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ARID5BQ14865 1188 aa20.65■□□□□ 0.9
COL9A3-204ENST00000463487 TRIP4Q15650 581 aaPredicted RBP20.65■□□□□ 0.9
COL9A3-204ENST00000463487 MLF2Q15773 248 aaPredicted RBP20.65■□□□□ 0.9
COL9A3-204ENST00000463487 NUGGCQ68CJ6 796 aa20.65■□□□□ 0.9
COL9A3-204ENST00000463487 UNC45BQ8IWX7 931 aa20.65■□□□□ 0.9
COL9A3-204ENST00000463487 SIX5Q8N196 739 aa20.65■□□□□ 0.9
COL9A3-204ENST00000463487 DQX1Q8TE96 717 aaKnown RBP20.65■□□□□ 0.9
COL9A3-204ENST00000463487 C1QTNF1Q9BXJ1 281 aa20.65■□□□□ 0.9
COL9A3-204ENST00000463487 EBF3Q9H4W6 596 aa20.65■□□□□ 0.9
COL9A3-204ENST00000463487 FAM204AQ9H8W3 233 aa20.65■□□□□ 0.9
COL9A3-204ENST00000463487 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.65■□□□□ 0.9
COL9A3-204ENST00000463487 SFMBT1Q9UHJ3 866 aa20.65■□□□□ 0.9
COL9A3-204ENST00000463487 CA14Q9ULX7 337 aa20.65■□□□□ 0.9
COL9A3-204ENST00000463487 MRPS17Q9Y2R5 130 aaKnown RBP20.65■□□□□ 0.9
COL9A3-204ENST00000463487 TMEM221A6NGB7 291 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 M0R296 226 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 ARNTLO00327 626 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 MAN2B1O00754 1011 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 RTN2O75298 545 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 GRAP2O75791 330 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 ADH1CP00326 375 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 CORO1AP31146 461 aaKnown RBP20.64■□□□□ 0.89
COL9A3-204ENST00000463487 CHKAP35790 457 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 TBX4P57082 545 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 RING1Q06587 406 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 TBX2Q13207 712 aaPredicted RBP20.64■□□□□ 0.89
COL9A3-204ENST00000463487 HGSNATQ68CP4 663 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 DNAJC24Q6P3W2 148 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 MON1BQ7L1V2 547 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 ARCQ7LC44 396 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 DEFB106AQ8N104 65 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 RIN3Q8TB24 985 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 PIWIL1Q96J94 861 aaKnown RBP20.64■□□□□ 0.89
COL9A3-204ENST00000463487 SELENOOQ9BVL4 669 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 HEBP1Q9NRV9 189 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 ADAMTS1Q9UHI8 967 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 TLR6Q9Y2C9 796 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 PAXBP1Q9Y5B6 917 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 PIAS3Q9Y6X2 628 aa20.64■□□□□ 0.89
COL9A3-204ENST00000463487 KIF26AQ9ULI4 1882 aaPredicted RBP20.64■□□□□ 0.89
COL9A3-204ENST00000463487 FAM170AA1A519 330 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 TMCO5BA8MYB1 307 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 STK25O00506 426 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 LATS1O95835 1130 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 TRUB2O95900 331 aaKnown RBP20.63■□□□□ 0.89
COL9A3-204ENST00000463487 APOEP02649 317 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 FYNP06241 537 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 MYBL1P10243 752 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 SLC2A3P11169 496 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 CDC25BP30305 580 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 ADKP55263 362 aaKnown RBP20.63■□□□□ 0.89
COL9A3-204ENST00000463487 TAF5Q15542 800 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 EML3Q32P44 896 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 C2CD6Q53TS8 623 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 SYPL2Q5VXT5 272 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 TRIM68Q6AZZ1 485 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 TPRG1Q6ZUI0 275 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 SND1Q7KZF4 910 aaKnown RBP eCLIP20.63■□□□□ 0.891e-8■■■□□ 15.4
COL9A3-204ENST00000463487 RALGPS2Q86X27 583 aaPredicted RBP20.63■□□□□ 0.89
COL9A3-204ENST00000463487 MCOLN2Q8IZK6 566 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 C3orf20Q8ND61 904 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 ASIC4Q96FT7 647 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 ECT2Q9H8V3 914 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 METTL5Q9NRN9 209 aaKnown RBP20.63■□□□□ 0.89
COL9A3-204ENST00000463487 DDIT4Q9NX09 232 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 GTSE1Q9NYZ3 720 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 SLC12A6Q9UHW9 1150 aa20.63■□□□□ 0.89
COL9A3-204ENST00000463487 SSU72P8A0A1W2PR75 194 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 DDX3XO00571 662 aaKnown RBP eCLIP20.62■□□□□ 0.89
COL9A3-204ENST00000463487 IRAK2O43187 625 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 MSI1O43347 362 aaKnown RBP20.62■□□□□ 0.89
COL9A3-204ENST00000463487 F9P00740 461 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 KRT3P12035 628 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 SLC11A2P49281 568 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 TNK2Q07912 1038 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 ZNF852Q6ZMS4 543 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 TAC4Q86UU9 113 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 BBS7Q8IWZ6 715 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 RNF34Q969K3 372 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 DDX50Q9BQ39 737 aaKnown RBP20.62■□□□□ 0.89
COL9A3-204ENST00000463487 EPHX3Q9H6B9 360 aa20.62■□□□□ 0.89
COL9A3-204ENST00000463487 TICRRQ7Z2Z1 1910 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 ADCY5O95622 1261 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 IGLV3-27P01718 113 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 FTLP02792 175 aaPredicted RBP20.61■□□□□ 0.89
COL9A3-204ENST00000463487 ARSAP15289 507 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 PTP4A2Q12974 167 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 Q6ZNB5 142 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.61■□□□□ 0.89
COL9A3-204ENST00000463487 DENND1CQ8IV53 801 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 ADGRG2Q8IZP9 1017 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 CCDC42Q96M95 316 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 NELL2Q99435 816 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 LINC00597Q9H2U6 94 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 HPS4Q9NQG7 708 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 PARVAQ9NVD7 372 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.61■□□□□ 0.89
COL9A3-204ENST00000463487 ARHGAP20Q9P2F6 1191 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 IMPACTQ9P2X3 320 aa20.61■□□□□ 0.89
COL9A3-204ENST00000463487 BDP1A6H8Y1 2624 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms