RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 LRRC71Q8N4P6 559 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 CXorf38Q8TB03 319 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 PIP4K2CQ8TBX8 421 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 PGBD4Q96DM1 585 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 GCNAQ96QF7 691 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 ECSITQ9BQ95 431 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 RBPJLQ9UBG7 517 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 SLC4A7Q9Y6M7 1214 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 ITM2AO43736 263 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 DGKIO75912 1065 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 PEX2P28328 305 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 ROR1Q01973 937 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 PIGHQ14442 188 aaPredicted RBP12.87□□□□□ -0.35
HDAC4-208ENST00000463007 IER5Q5VY09 327 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 TSHZ1Q6ZSZ6 1077 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 MZB1Q8WU39 189 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 FAM167AQ96KS9 214 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 FZD8Q9H461 694 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 TLE6Q9H808 572 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 IFT122Q9HBG6 1241 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 DRG1Q9Y295 367 aaKnown RBP12.87□□□□□ -0.35
HDAC4-208ENST00000463007 PLXNB2O15031 1838 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 CCDC78A2IDD5 438 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 KRT37O76014 449 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 RTN3O95197 1032 aaPredicted RBP12.87□□□□□ -0.35
HDAC4-208ENST00000463007 RBL1P28749 1068 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 ASPAP45381 313 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 GTF2A2P52657 109 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 AQP4P55087 323 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 DEUP1Q05D60 604 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 KRT81Q14533 505 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 ZNF699Q32M78 642 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 CNPY1Q3B7I2 92 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 PCGF5Q86SE9 256 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 TRIM50Q86XT4 487 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 NKD2Q969F2 451 aaPredicted RBP12.87□□□□□ -0.35
HDAC4-208ENST00000463007 CLMNQ96JQ2 1002 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 PHF12Q96QT6 1004 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 ADARB2Q9NS39 739 aaKnown RBP12.87□□□□□ -0.35
HDAC4-208ENST00000463007 DDX18Q9NVP1 670 aaKnown RBP12.87□□□□□ -0.35
HDAC4-208ENST00000463007 DNAJC16Q9Y2G8 782 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 SAT1P21673 171 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 ETV4P43268 484 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 DLG1Q12959 904 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 HIC1Q14526 733 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 Q3C1V9 767 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 SATL1Q86VE3 508 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 HPS6Q86YV9 775 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 LINC01465Q8N7H1 131 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 GATA6Q92908 595 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 PIWIL1Q96J94 861 aaKnown RBP12.87□□□□□ -0.35
HDAC4-208ENST00000463007 GORASP1Q9BQQ3 440 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 MRPL4Q9BYD3 311 aaKnown RBP12.87□□□□□ -0.35
HDAC4-208ENST00000463007 SMYD2Q9NRG4 433 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 HMGXB4Q9UGU5 601 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 USP18Q9UMW8 372 aa12.87□□□□□ -0.35
HDAC4-208ENST00000463007 ANKRD12Q6UB98 2062 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 CXCL11O14625 94 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 OGTO15294 1046 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 CFLARO15519 480 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 CSH1P0DML2 217 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 CSH2P0DML3 217 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 PGGT1BP53609 377 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 STX3Q13277 289 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 CCDC142Q17RM4 750 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 SFT2D3Q587I9 215 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 ZC3H12AQ5D1E8 599 aaKnown RBP12.86□□□□□ -0.35
HDAC4-208ENST00000463007 OR6B2Q6IFH4 312 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 PAOXQ6QHF9 649 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 SLC44A1Q8WWI5 657 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 ANKRD27Q96NW4 1050 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 STRIP2Q9ULQ0 834 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 PCDHGC3Q9UN70 934 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 SYNJ2BP-COX16A0A087WUM0 186 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 TRPA1O75762 1119 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 DDNO94850 711 aaPredicted RBP12.86□□□□□ -0.35
HDAC4-208ENST00000463007 LSM8O95777 96 aaKnown RBP12.86□□□□□ -0.35
HDAC4-208ENST00000463007 SLC25A27O95847 323 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 SNRPAP09012 282 aaKnown RBP12.86□□□□□ -0.35
HDAC4-208ENST00000463007 MRPS5P82675 430 aaKnown RBP12.86□□□□□ -0.35
HDAC4-208ENST00000463007 MXD4Q14582 209 aaPredicted RBP12.86□□□□□ -0.35
HDAC4-208ENST00000463007 MMEL1Q495T6 779 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 PPP1R2P3Q6NXS1 205 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 DEPDC1BQ8WUY9 529 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 ALKBH8Q96BT7 664 aaKnown RBP12.86□□□□□ -0.35
HDAC4-208ENST00000463007 NFKBIZQ9BYH8 718 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 ZNF358Q9NW07 568 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 COX16Q9P0S2 106 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 ZNF212Q9UDV6 495 aa12.86□□□□□ -0.35
HDAC4-208ENST00000463007 GOLGA8QA0A0J9YX86 632 aa12.85□□□□□ -0.35
HDAC4-208ENST00000463007 GOLGA8OA6NCC3 632 aa12.85□□□□□ -0.35
HDAC4-208ENST00000463007 GOLGA8NF8WBI6 632 aa12.85□□□□□ -0.35
HDAC4-208ENST00000463007 M0QYV0 167 aa12.85□□□□□ -0.35
HDAC4-208ENST00000463007 NEMP1O14524 444 aa12.85□□□□□ -0.35
HDAC4-208ENST00000463007 B4GALT4O60513 344 aa12.85□□□□□ -0.35
HDAC4-208ENST00000463007 ZBED1O96006 694 aa12.85□□□□□ -0.35
HDAC4-208ENST00000463007 IQCF3P0C7M6 154 aa12.85□□□□□ -0.35
HDAC4-208ENST00000463007 TCN1P20061 433 aaPredicted RBP12.85□□□□□ -0.35
HDAC4-208ENST00000463007 PTPN7P35236 360 aa12.85□□□□□ -0.35
HDAC4-208ENST00000463007 SESN2P58004 480 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 121.2 ms