RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MARVELD2Q8N4S9 558 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 NETO2Q8NC67 525 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 ZSCAN18Q8TBC5 510 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 CEP170P1Q96L14 293 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 FBXL18Q96ME1 805 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 ZC3H12CQ9C0D7 883 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 POPDC2Q9HBU9 364 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 THAP1Q9NVV9 213 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 GPATCH2LQ9NWQ4 482 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 FAF1Q9UNN5 650 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 HEY1Q9Y5J3 304 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 NEMP1O14524 444 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 NDC80O14777 642 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 MCF2LO15068 1137 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 KCNN4O15554 427 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 IL1BP01584 269 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 FGF3P11487 239 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 PTPN1P18031 435 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 HDAC4P56524 1084 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 MRPS9P82933 396 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 LPIN1Q14693 890 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 BBS12Q6ZW61 710 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 KCTD17Q8N5Z5 321 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 ATXN7L3BQ96GX2 97 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 MARK4Q96L34 752 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 LRGUKQ96M69 825 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 PKP2Q99959 881 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 DCUN1D5Q9BTE7 237 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 EMCNQ9ULC0 261 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 DMTF1Q9Y222 760 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 CEPT1Q9Y6K0 416 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 TCRBV5S1A1TA0A578 114 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 WDR64B1ANS9 1081 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 NOP56O00567 594 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 STAM2O75886 525 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 FBXO21O94952 628 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 CDH2P19022 906 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 LIG4P49917 911 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 NUDT2P50583 147 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 THOP1P52888 689 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 SLC10A2Q12908 348 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 DGKZQ13574 1117 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 KCNJ11Q14654 390 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 TKFCQ3LXA3 575 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 MBLAC2Q68D91 279 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 CC2D2BQ6DHV5 1058 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 CAND1Q86VP6 1230 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 RAB3IL1Q8TBN0 382 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 PPP4R1Q8TF05 950 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 RIT2Q99578 217 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 EPB41L1Q9H4G0 881 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 AGO4Q9HCK5 861 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 CYTH4Q9UIA0 394 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 HERC5Q9UII4 1024 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 FOCADQ5VW36 1801 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 CSPG5O95196 566 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 ABCG1P45844 678 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 MS4A2Q01362 244 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 ROR1Q01973 937 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 MTMR1Q13613 665 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 C16orf72Q14CZ0 275 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 CDO1Q16878 200 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 ITPRIPL1Q6GPH6 555 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 DENND1BQ6P3S1 775 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 FAM196AQ6ZSG2 479 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 DPH6Q7L8W6 267 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 RNF169Q8NCN4 708 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 PFDN4Q9NQP4 134 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 ZNF219Q9P2Y4 722 aaPredicted RBP12.09□□□□□ -0.47
CPSF3-202ENST00000460593 STAMBPO95630 424 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 COX4I1P13073 169 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 L1CAMP32004 1257 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 NAA20P61599 178 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 PRKG1Q13976 671 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 PTPN20Q4JDL3 420 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 SLC9B1Q4ZJI4 515 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 ANKRD23Q86SG2 305 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 TNS4Q8IZW8 715 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 MAPK15Q8TD08 544 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 VCPIP1Q96JH7 1222 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 LENG8Q96PV6 779 aaPredicted RBP12.09□□□□□ -0.47
CPSF3-202ENST00000460593 SORT1Q99523 831 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 MRPS26Q9BYN8 205 aaKnown RBP12.09□□□□□ -0.47
CPSF3-202ENST00000460593 NDUFA13Q9P0J0 144 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 NRAPQ86VF7 1730 aa12.09□□□□□ -0.47
CPSF3-202ENST00000460593 CASQ2O14958 399 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 GRAP2O75791 330 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 RAD17O75943 681 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 COL6A2P12110 1019 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 CD19P15391 556 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 RBL1P28749 1068 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 EPHA3P29320 983 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 CCR10P46092 362 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 PGGT1BP53609 377 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 BSPRYQ5W0U4 402 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 TRIM72Q6ZMU5 477 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 BTBD9Q96Q07 612 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 CDRT15Q96T59 188 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 WDR55Q9H6Y2 383 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 C17orf75Q9HAS0 396 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms