RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 PPP3CAQ08209 521 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 PKP1Q13835 747 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 HNRNPDQ14103 355 aaKnown RBP8.17□□□□□ -1.1
CD44-211ENST00000442151 STARD3Q14849 445 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 SGO2Q562F6 1265 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 SYCP2LQ5T4T6 812 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 PMS2CLQ68D20 193 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 CLEC20AQ6ZU45 233 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 BBS7Q8IWZ6 715 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 ALLCQ8N6M5 410 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 C12orf29Q8N999 325 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 IL17RCQ8NAC3 791 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 OLIG1Q8TAK6 271 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 TAS1R2Q8TE23 839 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 RNF139Q8WU17 664 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 CEP63Q96MT8 703 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 DDX50Q9BQ39 737 aaKnown RBP8.17□□□□□ -1.1
CD44-211ENST00000442151 TRIM62Q9BVG3 475 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 LSM14BQ9BX40 385 aaKnown RBP8.17□□□□□ -1.1
CD44-211ENST00000442151 TMEM9BQ9NQ34 198 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.17□□□□□ -1.1
CD44-211ENST00000442151 MAPK8IP1Q9UQF2 711 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 NME7Q9Y5B8 376 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 USP3Q9Y6I4 520 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 OBSL1O75147 1896 aa8.17□□□□□ -1.1
CD44-211ENST00000442151 RALGAPA1Q6GYQ0 2036 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 A0A1W2PQH9 124 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 PMM2O15305 246 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 CACNG3O60359 315 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 SYNCRIPO60506 623 aaKnown RBP8.16□□□□□ -1.1
CD44-211ENST00000442151 NDUFS2O75306 463 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 LATS1O95835 1130 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 SYPP08247 313 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 SETSIPP0DME0 302 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 HOXB2P14652 356 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 TYRP14679 529 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 GNSP15586 552 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 OXTRP30559 389 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 P2RY2P41231 377 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 KIR2DL1P43626 348 aaPredicted RBP8.16□□□□□ -1.1
CD44-211ENST00000442151 HARS2P49590 506 aaKnown RBP8.16□□□□□ -1.1
CD44-211ENST00000442151 BCAT1P54687 386 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 ZXDBP98169 803 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 KDSRQ06136 332 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 SF3A2Q15428 464 aaKnown RBP8.16□□□□□ -1.1
CD44-211ENST00000442151 DUOXA1Q1HG43 343 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 GAB4Q2WGN9 574 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 SPOPLQ6IQ16 392 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 FOXR2Q6PJQ5 311 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 TMEM25Q86YD3 366 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 SYT12Q8IV01 421 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 CCDC117Q8IWD4 279 aaPredicted RBP8.16□□□□□ -1.1
CD44-211ENST00000442151 ETFBKMTQ8IXQ9 262 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 NAT16Q8N8M0 369 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 ZMIZ2Q8NF64 920 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 FOXJ1Q92949 421 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 PLD4Q96BZ4 506 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 IPO9Q96P70 1041 aaKnown RBP8.16□□□□□ -1.1
CD44-211ENST00000442151 CISHQ9NSE2 258 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 C2orf42Q9NWW7 574 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 SUSD2Q9UGT4 822 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 COQ4Q9Y3A0 265 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 PTPRDP23468 1912 aa8.16□□□□□ -1.1
CD44-211ENST00000442151 HELZP42694 1942 aaKnown RBP8.15□□□□□ -1.1
CD44-211ENST00000442151 TCRBV21S2A2A0A5A6 115 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 NEDD8-MDP1E9PL57 170 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 SGK1O00141 431 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 BEST1O76090 585 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 PAEPP09466 180 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 TRIM49P0CI25 452 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 TRIM49CP0CI26 452 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 HNRNPLP14866 589 aaKnown RBP eCLIP8.15□□□□□ -1.1
CD44-211ENST00000442151 LORP23490 312 aaPredicted RBP8.15□□□□□ -1.1
CD44-211ENST00000442151 YWHAGP61981 247 aaKnown RBP eCLIP8.15□□□□□ -1.1
CD44-211ENST00000442151 PDE4CQ08493 712 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 MPPE1Q53F39 396 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 DCAF17Q5H9S7 520 aaPredicted RBP8.15□□□□□ -1.1
CD44-211ENST00000442151 C1orf220Q5T0J3 134 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 PPP1R26Q5T8A7 1209 aaPredicted RBP8.15□□□□□ -1.1
CD44-211ENST00000442151 LYSMD4Q5XG99 296 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 CHPFQ8IZ52 775 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 SIX6OS1Q8N1H7 587 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 CPXM2Q8N436 756 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 HDDC3Q8N4P3 179 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 HMGB4Q8WW32 186 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 PIGKQ92643 395 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 EDEM2Q9BV94 578 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 TPSD1Q9BZJ3 242 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 APOBEC3GQ9HC16 384 aaKnown RBP8.15□□□□□ -1.1
CD44-211ENST00000442151 ABCC13Q9NSE7 274 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 MARCH2Q9P0N8 246 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 RASAL2Q9UJF2 1139 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 SLC27A6Q9Y2P4 619 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 HBS1LQ9Y450 684 aaKnown RBP8.15□□□□□ -1.1
CD44-211ENST00000442151 OTOGLQ3ZCN5 2332 aa8.15□□□□□ -1.1
CD44-211ENST00000442151 HHLA1C9JL84 531 aa8.15□□□□□ -1.11
CD44-211ENST00000442151 XPO1O14980 1071 aaKnown RBP8.15□□□□□ -1.11
CD44-211ENST00000442151 SART1O43290 800 aaKnown RBP8.15□□□□□ -1.11
CD44-211ENST00000442151 ZBED1O96006 694 aa8.15□□□□□ -1.11
CD44-211ENST00000442151 CD19P15391 556 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms