RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ZNF804AQ7Z570 1209 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 ZNF354CQ86Y25 554 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 CPXCR1Q8N123 301 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 CTHRC1Q96CG8 243 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 WDYHV1Q96HA8 205 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 PRR25Q96S07 402 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 INO80BQ9C086 356 aaPredicted RBP4.07□□□□□ -1.76
VPS41-207ENST00000439468 TMEM8AQ9HCN3 771 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 RNF7Q9UBF6 113 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 SRP68Q9UHB9 627 aaKnown RBP4.07□□□□□ -1.76
VPS41-207ENST00000439468 LINC01548A6NM66 108 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 TARM1B6A8C7 271 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 H0YIZ8 118 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 M0R3H8 397 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 CA12O43570 354 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 SPRY2O43597 315 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 SNX2O60749 519 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 CBFA2T3O75081 653 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 JTBO76095 146 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 PDE8BO95263 885 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 CER1O95813 267 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 ONECUT2O95948 504 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 VIPP01282 170 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 DHRS4L1P0CG22 281 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 PCSK6P29122 969 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 MCM5P33992 734 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 PRKAA2P54646 552 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 TPTEP56180 551 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 RAPGEF1Q13905 1077 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 P3H1Q32P28 736 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 TMEM196Q5HYL7 178 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 MZT2AQ6P582 158 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 ANKRD16Q6P6B7 361 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 KLHL17Q6TDP4 642 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 MOGAT3Q86VF5 341 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 KRT73Q86Y46 540 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 GATAD2AQ86YP4 633 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 CCDC117Q8IWD4 279 aaPredicted RBP4.06□□□□□ -1.76
VPS41-207ENST00000439468 MBD3L2Q8NHZ7 208 aaPredicted RBP4.06□□□□□ -1.76
VPS41-207ENST00000439468 CSGALNACT1Q8TDX6 532 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 OTUD7AQ8TE49 926 aaPredicted RBP4.06□□□□□ -1.76
VPS41-207ENST00000439468 ABHD5Q8WTS1 349 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 TRAPPC12Q8WVT3 735 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 SOCS4Q8WXH5 440 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 TBC1D5Q92609 795 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 DPF1Q92782 380 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 EID2BQ96D98 161 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 LTV1Q96GA3 475 aaPredicted RBP4.06□□□□□ -1.76
VPS41-207ENST00000439468 ZDHHC12Q96GR4 267 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 FAM167BQ9BTA0 163 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 DPCDQ9BVM2 203 aaPredicted RBP4.06□□□□□ -1.76
VPS41-207ENST00000439468 PABPC3Q9H361 631 aaKnown RBP4.06□□□□□ -1.76
VPS41-207ENST00000439468 SERGEFQ9UGK8 458 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 HERC5Q9UII4 1024 aaKnown RBP4.06□□□□□ -1.76
VPS41-207ENST00000439468 PCDHB7Q9Y5E2 793 aa4.06□□□□□ -1.76
VPS41-207ENST00000439468 KAT6AQ92794 2004 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 COL15A1P39059 1388 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 AOX1Q06278 1338 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 DNAJC9-AS1A6NH13 148 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 HMX3A6NHT5 357 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 M0QYT0 321 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 M0QZQ0 153 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 PPP6R2O75170 966 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 PMPCBO75439 489 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 ACTL6BO94805 426 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 WDR47O94967 919 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 FGAP02671 866 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 NPSP0C0P6 89 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 ALADP13716 330 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 DRD1P21728 446 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 RBL1P28749 1068 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 CTGFP29279 349 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 SLC5A2P31639 672 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 MTHFSP49914 203 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 ALDH18A1P54886 795 aaKnown RBP4.05□□□□□ -1.76
VPS41-207ENST00000439468 E2F1Q01094 437 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 FOXO1Q12778 655 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 FOXF2Q12947 444 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 BIRC3Q13489 604 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 CUL4BQ13620 913 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 ACOX1Q15067 660 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 AARS2Q5JTZ9 985 aaKnown RBP4.05□□□□□ -1.76
VPS41-207ENST00000439468 KIAA1614Q5VZ46 1190 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 MSANTD2Q6P1R3 559 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 ZNF782Q6ZMW2 699 aaPredicted RBP4.05□□□□□ -1.76
VPS41-207ENST00000439468 PIK3AP1Q6ZUJ8 805 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 WDR53Q7Z5U6 358 aaPredicted RBP4.05□□□□□ -1.76
VPS41-207ENST00000439468 SMAP1Q8IYB5 467 aaPredicted RBP4.05□□□□□ -1.76
VPS41-207ENST00000439468 GALNT15Q8N3T1 639 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 PPM1EQ8WY54 764 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 RUBCNQ92622 972 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 ZNF668Q96K58 619 aaPredicted RBP4.05□□□□□ -1.76
VPS41-207ENST00000439468 LENG8Q96PV6 779 aaPredicted RBP4.05□□□□□ -1.76
VPS41-207ENST00000439468 WDR24Q96S15 920 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 MECRQ9BV79 373 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 VPS16Q9H269 839 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 SEPSECSQ9HD40 501 aaKnown RBP4.05□□□□□ -1.76
VPS41-207ENST00000439468 DUSP22Q9NRW4 184 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 DLL3Q9NYJ7 618 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 RRN3Q9NYV6 651 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms