RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CAVIN1Q6NZI2 390 aaKnown RBP15.88■□□□□ 0.13
LIMS3-201ENST00000437679 DENND1CQ8IV53 801 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 SCUBE3Q8IX30 993 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 ETFBKMTQ8IXQ9 262 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 USP33Q8TEY7 942 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 CLEC4CQ8WTT0 213 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 SLC4A5Q9BY07 1137 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 SFMBT1Q9UHJ3 866 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 PCDHGC3Q9UN70 934 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 FHOD1Q9Y613 1164 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 EP300Q09472 2414 aaPredicted RBP15.87■□□□□ 0.13
LIMS3-201ENST00000437679 TBC1D3BA6NDS4 549 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 TYRP14679 529 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 UCHL3P15374 230 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 HOXA6P31267 233 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 CLCN1P35523 988 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 TNFRSF4P43489 277 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 FNTBP49356 437 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 MRPS21P82921 87 aaKnown RBP15.87■□□□□ 0.13
LIMS3-201ENST00000437679 TRIP4Q15650 581 aaPredicted RBP15.87■□□□□ 0.13
LIMS3-201ENST00000437679 C2orf27AQ580R0 203 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 HEATR6Q6AI08 1181 aaKnown RBP15.87■□□□□ 0.13
LIMS3-201ENST00000437679 GRAMD4Q6IC98 578 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 DPY19L2P1Q6NXN4 242 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 MSANTD2Q6P1R3 559 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 SYT13Q7L8C5 426 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 SLC47A2Q86VL8 602 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 LONP2Q86WA8 852 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 FAM71AQ8IYT1 594 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 FAM149B1Q96BN6 582 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 NOX5Q96PH1 765 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 TRIM62Q9BVG3 475 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 DNAJC17Q9NVM6 304 aaKnown RBP15.87■□□□□ 0.13
LIMS3-201ENST00000437679 LIMA1Q9UHB6 759 aaKnown RBP15.87■□□□□ 0.13
LIMS3-201ENST00000437679 AGO1Q9UL18 857 aaKnown RBP15.87■□□□□ 0.13
LIMS3-201ENST00000437679 CEP83Q9Y592 693 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 DMDP11532 3685 aa15.87■□□□□ 0.13
LIMS3-201ENST00000437679 MYO18AQ92614 2054 aaKnown RBP15.87■□□□□ 0.13
LIMS3-201ENST00000437679 A0A0A0MRY4 1105 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 E5RJQ4 531 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 CACNG3O60359 315 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 CYBBP04839 570 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 PNMA6AP0CW24 399 aaPredicted RBP15.86■□□□□ 0.13
LIMS3-201ENST00000437679 NCAM1P13591 858 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 COPB1P53618 953 aaKnown RBP15.86■□□□□ 0.13
LIMS3-201ENST00000437679 SNX16P57768 344 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 DMWDQ09019 674 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 MESP2Q0VG99 397 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 PDCLQ13371 301 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 DMC1Q14565 340 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 ANO6Q4KMQ2 910 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 TMEM110Q86TL2 294 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 PASD1Q8IV76 773 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 CPXM2Q8N436 756 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 CAMKK1Q8N5S9 505 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 TERB1Q8NA31 727 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 BHMTQ93088 406 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 NAA15Q9BXJ9 866 aaKnown RBP15.86■□□□□ 0.13
LIMS3-201ENST00000437679 STK33Q9BYT3 514 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 LHX5Q9H2C1 402 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 PDCL3Q9H2J4 239 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 PLCB1Q9NQ66 1216 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 CYTH4Q9UIA0 394 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 KIAA1549LQ6ZVL6 1849 aa15.86■□□□□ 0.13
LIMS3-201ENST00000437679 USP34Q70CQ2 3546 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 CAPN9O14815 690 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 PAPSS1O43252 624 aaPredicted RBP15.85■□□□□ 0.13
LIMS3-201ENST00000437679 MSI1O43347 362 aaKnown RBP15.85■□□□□ 0.13
LIMS3-201ENST00000437679 CNR2P34972 360 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 TIE1P35590 1138 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 HSF5Q4G112 596 aaPredicted RBP15.85■□□□□ 0.13
LIMS3-201ENST00000437679 WDR5BQ86VZ2 330 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 SFTPA1Q8IWL2 248 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 PHTF2Q8N3S3 785 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 AOPEPQ8N6M6 819 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 PPP1R13BQ96KQ4 1090 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 PCMTD1Q96MG8 357 aaPredicted RBP15.85■□□□□ 0.13
LIMS3-201ENST00000437679 HHIPQ96QV1 700 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 EPC1Q9H2F5 836 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 POLR3BQ9NW08 1133 aaPredicted RBP15.85■□□□□ 0.13
LIMS3-201ENST00000437679 PLK2Q9NYY3 685 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 RAB23Q9ULC3 237 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 MMP17Q9ULZ9 603 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 GPR179Q6PRD1 2367 aa15.85■□□□□ 0.13
LIMS3-201ENST00000437679 OTOGLQ3ZCN5 2332 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 CCDC163A0A0D9SF12 145 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 LGALS16A8MUM7 142 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 APBB3O95704 486 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 LATS1O95835 1130 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 ZNF18P17022 549 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 PTMSP20962 102 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 DGKGP49619 791 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 TBX4P57082 545 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 NCAPHQ15003 741 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 C10orf76Q5T2E6 689 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 NUGGCQ68CJ6 796 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 BEND5Q7L4P6 421 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 UNC45BQ8IWX7 931 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 WDTC1Q8N5D0 677 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 CCDC33Q8N5R6 958 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms