RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SGSM3Q96HU1 749 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 ERI2A8K979 691 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 M0R3G1 203 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 RGS5O15539 181 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 HPCAL1P37235 193 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 DNERQ8NFT8 737 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 PGM5Q15124 567 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 KBTBD12Q3ZCT8 623 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 CBWD2Q8IUF1 395 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 CCT8L2Q96SF2 557 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 CISHQ9NSE2 258 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 XPO1O14980 1071 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 CYP2C8P10632 490 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 SP100P23497 879 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 CYP2F1P24903 491 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 SOX10P56693 466 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 CYLC2Q14093 348 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 C11orf63Q6NUN7 778 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 MTSS1LQ765P7 747 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 SETD3Q86TU7 594 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 OSCP1Q8WVF1 389 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 TUBGCP3Q96CW5 907 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 APOL2Q9BQE5 337 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 LSM8O95777 96 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 ALDH2P05091 517 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 CCR4P51679 360 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 INTS5Q6P9B9 1019 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 TDRD5Q8NAT2 981 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 PRMT6Q96LA8 375 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 ZCCHC2Q9C0B9 1178 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 XPNPEP3Q9NQH7 507 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 TMCC3Q9ULS5 477 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 ALG6Q9Y672 507 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 ITGB4P16144 1822 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SGPL1O95470 568 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 RPN2P04844 631 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 USP17L7P0C7H9 530 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 COILP38432 576 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 MMRN1Q13201 1228 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 PRR23CQ6ZRP0 262 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 LRRC6Q86X45 466 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 KIF2BQ8N4N8 673 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 E2F7Q96AV8 911 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 CENPTQ96BT3 561 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 CCT7Q99832 543 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 WHRNQ9P202 907 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TAF1P21675 1872 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 F9P00740 461 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 KCNA3P22001 575 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 MARSP56192 900 aaKnown RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 CASP10Q92851 521 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 THAP11Q96EK4 314 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 MRPL48Q96GC5 212 aaKnown RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 ATXN3LQ9H3M9 355 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TTC33Q6PID6 262 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 CAMKK1Q8N5S9 505 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 KCTD14Q9BQ13 255 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 ERP44Q9BS26 406 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 ZFYVE1Q9HBF4 777 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TRPM6Q9BX84 2022 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 MANSC4A6NHS7 340 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 E9PBE3 544 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 BAIAP3O94812 1187 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TERF2Q15554 542 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 CYP20A1Q6UW02 462 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 GLT6D1Q7Z4J2 308 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 DSG4Q86SJ6 1040 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 OR2W6PQ8NHA6 318 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SPG21Q9NZD8 308 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 POLR1DQ9Y2S0 133 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 DDX60Q8IY21 1712 aaKnown RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 KATNA1O75449 491 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SLC26A2P50443 739 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TRIP10Q15642 601 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 NBPF12Q5TAG4 269 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SLC30A10Q6XR72 485 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 USP38Q8NB14 1042 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 ATG4AQ8WYN0 398 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SKA1Q96BD8 255 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SMPD4Q9NXE4 827 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SNTG2Q9NY99 539 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SNCAIPQ9Y6H5 919 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 AGLP35573 1532 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SUPT7LO94864 414 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 NFE2Q16621 373 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SEL1L3Q68CR1 1132 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 SLC16A10Q8TF71 515 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 ZSWIM1Q9BR11 485 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TMEM121Q9BTD3 319 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 ZDHHC6Q9H6R6 413 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 DDX43Q9NXZ2 648 aaKnown RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TUBGCP4Q9UGJ1 667 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 MCM3APO60318 1980 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TSPAN3O60637 253 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 VIL1P09327 827 aaKnown RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 TAL1P17542 331 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 COL14A1Q05707 1796 aaKnown RBP12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 NFIAQ12857 509 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 ERMARDQ5T6L9 678 aa12.38□□□□□ -0.43
CCDC88A-207ENST00000436346 CAPRIN2Q6IMN6 1127 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms