RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CTC1Q2NKJ3 1217 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 CCDC14Q49A88 953 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 BOLA3Q53S33 107 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 EFHC2Q5JST6 749 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 BRMS1LQ5PSV4 323 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 TXNDC8Q6A555 127 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 CC2D1AQ6P1N0 951 aaPredicted RBP10.52□□□□□ -0.73
CD44-207ENST00000425428 HFE2Q6ZVN8 426 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 GET4Q7L5D6 327 aaPredicted RBP10.52□□□□□ -0.73
CD44-207ENST00000425428 SCD5Q86SK9 330 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 TMC8Q8IU68 726 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 MAP7D3Q8IWC1 876 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 RHOT1Q8IXI2 618 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 NIPA2Q8N8Q9 360 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 TTC16Q8NEE8 873 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 ZNF707Q96C28 371 aaPredicted RBP10.52□□□□□ -0.73
CD44-207ENST00000425428 CCSER2Q9H7U1 834 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 KIF9Q9HAQ2 790 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 NMUR1Q9HB89 426 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 DDX56Q9NY93 547 aaKnown RBP10.52□□□□□ -0.73
CD44-207ENST00000425428 GDE1Q9NZC3 331 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 TFR2Q9UP52 801 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 DUSP10Q9Y6W6 482 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 TCRBV5S1A1TA0A578 114 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 CCDC66A2RUB6 948 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 RCCD1A6NED2 376 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 BUB1BO60566 1050 aaPredicted RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 GJB6O95452 261 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 TNNT1P13805 278 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 KCNA5P22460 613 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 RBM10P98175 930 aaKnown RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 RING1Q06587 406 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 TEAD2Q15562 447 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 TRIP4Q15650 581 aaPredicted RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 AAK1Q2M2I8 961 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 DNTTIP2Q5QJE6 756 aaKnown RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 SYPL2Q5VXT5 272 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 SYCE2Q6PIF2 218 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 GAREM2Q75VX8 874 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 OTOP3Q7RTS5 596 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 SLFN11Q7Z7L1 901 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 CCDC117Q8IWD4 279 aaPredicted RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 REXO1L1PQ8IX06 675 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 CMTM8Q8IZV2 173 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 SHKBP1Q8TBC3 707 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 DQX1Q8TE96 717 aaKnown RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 PGAP3Q96FM1 320 aaPredicted RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 PIWIL1Q96J94 861 aaKnown RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 BTBD6Q96KE9 485 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 TBCBQ99426 244 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 NPY6RQ99463 290 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 UBE2ZQ9H832 354 aaPredicted RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 THG1LQ9NWX6 298 aaKnown RBP10.51□□□□□ -0.73
CD44-207ENST00000425428 MTMR10Q9NXD2 777 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 DONSONQ9NYP3 566 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 STIM2Q9P246 746 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 SFMBT1Q9UHJ3 866 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 USP18Q9UMW8 372 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 NR2E1Q9Y466 385 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 JRKLQ9Y4A0 524 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 ALG6Q9Y672 507 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 TRANK1O15050 2925 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 DOCK6Q96HP0 2047 aa10.51□□□□□ -0.73
CD44-207ENST00000425428 CHD9Q3L8U1 2897 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 CTAGE9A4FU28 777 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 SLC9A3R1O14745 358 aaPredicted RBP10.5□□□□□ -0.73
CD44-207ENST00000425428 COCHO43405 550 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 PSTPIP1O43586 416 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 TBX10O75333 385 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 PAPLNO95428 1278 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 OAS1P00973 400 aaKnown RBP10.5□□□□□ -0.73
CD44-207ENST00000425428 CASQ1P31415 396 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 ZNF135P52742 658 aaPredicted RBP10.5□□□□□ -0.73
CD44-207ENST00000425428 SMAD4Q13485 552 aaKnown RBP10.5□□□□□ -0.73
CD44-207ENST00000425428 KRT81Q14533 505 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 PPP2R5DQ14738 602 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 CBX2Q14781 532 aaPredicted RBP10.5□□□□□ -0.73
CD44-207ENST00000425428 RPS6KA1Q15418 735 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 CLUL1Q15846 466 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 C15orf59Q2T9L4 293 aaPredicted RBP10.5□□□□□ -0.73
CD44-207ENST00000425428 LRRC31Q6UY01 552 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 TAC4Q86UU9 113 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 ARL14EPQ8N8R7 260 aaPredicted RBP10.5□□□□□ -0.73
CD44-207ENST00000425428 ADAM32Q8TC27 787 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 MAK16Q9BXY0 300 aaKnown RBP10.5□□□□□ -0.73
CD44-207ENST00000425428 LRRC3Q9BY71 257 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 IL21Q9HBE4 155 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 TDP1Q9NUW8 608 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 CLEC1BQ9P126 229 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 TRIM10Q9UDY6 481 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 NUDT5Q9UKK9 219 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 CHD7Q9P2D1 2997 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 LAMA3Q16787 3333 aa10.5□□□□□ -0.73
CD44-207ENST00000425428 C2orf78A6NCI8 922 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 IRAK2O43187 625 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 HMBSP08397 361 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 GJA1P17302 382 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 COMTP21964 271 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 GJC1P36383 396 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 ARL4AP40617 200 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms