RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 MARCH5Q9NX47 278 aa27.53■■■□□ 2
LDB1-202ENST00000425280 GOT1P17174 413 aa27.52■■■□□ 2
LDB1-202ENST00000425280 GRIK1P39086 918 aa27.52■■■□□ 2
LDB1-202ENST00000425280 SCAMP5Q8TAC9 235 aa27.52■■■□□ 2
LDB1-202ENST00000425280 PGAP3Q96FM1 320 aaPredicted RBP27.52■■■□□ 2
LDB1-202ENST00000425280 COLEC11Q9BWP8 271 aa27.52■■■□□ 2
LDB1-202ENST00000425280 RRN3Q9NYV6 651 aa27.52■■■□□ 2
LDB1-202ENST00000425280 PARNO95453 639 aaKnown RBP27.52■■■□□ 2
LDB1-202ENST00000425280 ALDH2P05091 517 aa27.52■■■□□ 2
LDB1-202ENST00000425280 ZFXP17010 805 aaPredicted RBP27.52■■■□□ 2
LDB1-202ENST00000425280 STIP1P31948 543 aaKnown RBP27.52■■■□□ 2
LDB1-202ENST00000425280 FAM171A1Q5VUB5 890 aa27.52■■■□□ 2
LDB1-202ENST00000425280 BSPRYQ5W0U4 402 aa27.52■■■□□ 2
LDB1-202ENST00000425280 DEFB128Q7Z7B8 93 aa27.52■■■□□ 2
LDB1-202ENST00000425280 SLC9A7Q96T83 725 aa27.52■■■□□ 2
LDB1-202ENST00000425280 GPR62Q9BZJ7 368 aa27.52■■■□□ 2
LDB1-202ENST00000425280 RCOR3Q9P2K3 495 aaPredicted RBP27.52■■■□□ 2
LDB1-202ENST00000425280 ARL4AP40617 200 aa27.51■■□□□ 1.99
LDB1-202ENST00000425280 KRT71Q3SY84 523 aa27.51■■□□□ 1.99
LDB1-202ENST00000425280 CENPHQ9H3R5 247 aa27.51■■□□□ 1.99
LDB1-202ENST00000425280 USP29Q9HBJ7 922 aa27.51■■□□□ 1.99
LDB1-202ENST00000425280 ABI2Q9NYB9 513 aaPredicted RBP27.51■■□□□ 1.99
LDB1-202ENST00000425280 FARP1Q9Y4F1 1045 aaPredicted RBP27.51■■□□□ 1.99
LDB1-202ENST00000425280 TBKBP1A7MCY6 615 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 HMGB1P1B2RPK0 211 aaPredicted RBP27.5■■□□□ 1.99
LDB1-202ENST00000425280 TNFRSF10BO14763 440 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 NDC80O14777 642 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 MAP3K6O95382 1288 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 AMPD1P23109 780 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 CTCFP49711 727 aaPredicted RBP27.5■■□□□ 1.99
LDB1-202ENST00000425280 NRLP54845 237 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 MRPL58Q14197 206 aaKnown RBP27.5■■□□□ 1.99
LDB1-202ENST00000425280 CEP57Q86XR8 500 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 UHMK1Q8TAS1 419 aaKnown RBP27.5■■□□□ 1.99
LDB1-202ENST00000425280 DDIT4Q9NX09 232 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 SHOC2Q9UQ13 582 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 ADRA1BP35368 520 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 SLC5A3P53794 718 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 GBE1Q04446 702 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 SLC10A2Q12908 348 aaPredicted RBP27.5■■□□□ 1.99
LDB1-202ENST00000425280 RELL1Q8IUW5 271 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 DIS3LQ8TF46 1054 aaKnown RBP27.5■■□□□ 1.99
LDB1-202ENST00000425280 PRCCQ92733 491 aaPredicted RBP27.5■■□□□ 1.99
LDB1-202ENST00000425280 NTAN1Q96AB6 310 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 MRPL9Q9BYD2 267 aaKnown RBP27.5■■□□□ 1.99
LDB1-202ENST00000425280 ETNK2Q9NVF9 386 aa27.5■■□□□ 1.99
LDB1-202ENST00000425280 CTXN3Q4LDR2 81 aa27.49■■□□□ 1.99
LDB1-202ENST00000425280 EFHC2Q5JST6 749 aa27.49■■□□□ 1.99
LDB1-202ENST00000425280 NCBP2-AS2Q69YL0 99 aa27.49■■□□□ 1.99
LDB1-202ENST00000425280 PCGF5Q86SE9 256 aa27.49■■□□□ 1.99
LDB1-202ENST00000425280 RNF139Q8WU17 664 aa27.49■■□□□ 1.99
LDB1-202ENST00000425280 B3GALT6Q96L58 329 aa27.49■■□□□ 1.99
LDB1-202ENST00000425280 RBM15Q96T37 977 aaKnown RBP eCLIP27.49■■□□□ 1.992e-9■■■■□ 23
LDB1-202ENST00000425280 ANLNQ9NQW6 1124 aa27.49■■□□□ 1.99
LDB1-202ENST00000425280 FBXW11Q9UKB1 542 aa27.49■■□□□ 1.99
LDB1-202ENST00000425280 FNDC1Q4ZHG4 1894 aaPredicted RBP27.49■■□□□ 1.99
LDB1-202ENST00000425280 BCLAF3A2AJT9 711 aaKnown RBP27.48■■□□□ 1.99
LDB1-202ENST00000425280 TTC4O95801 387 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 FGFR3P22607 806 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 AIF1P55008 147 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 NFE2Q16621 373 aaPredicted RBP27.48■■□□□ 1.99
LDB1-202ENST00000425280 C1orf53Q5VUE5 145 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 SCN4BQ8IWT1 228 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 CPT1BQ92523 772 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 ARHGEF4Q9NR80 690 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 NINJ2Q9NZG7 142 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 MFHAS1Q9Y4C4 1052 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 H3BRJ5 948 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 ACSL3O95573 720 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 NR2C2P49116 596 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 SCAPQ12770 1279 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 KYNUQ16719 465 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 AGBL2Q5U5Z8 902 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 CEP128Q6ZU80 1094 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 PPIL6Q8IXY8 311 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 RTP4Q96DX8 246 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 FUBP3Q96I24 572 aaKnown RBP eCLIP27.48■■□□□ 1.99
LDB1-202ENST00000425280 TMEM175Q9BSA9 504 aa27.48■■□□□ 1.99
LDB1-202ENST00000425280 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP27.48■■□□□ 1.99
LDB1-202ENST00000425280 CFAP69A5D8W1 941 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 I6L893 689 aaPredicted RBP27.47■■□□□ 1.99
LDB1-202ENST00000425280 F9P00740 461 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 AMHP03971 560 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 GALTP07902 379 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 RBL1P28749 1068 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 IFRD2Q12894 506 aaPredicted RBP27.47■■□□□ 1.99
LDB1-202ENST00000425280 FUT10Q6P4F1 479 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 MICAL3Q7RTP6 2002 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 ZNF333Q96JL9 665 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 PSD3Q9NYI0 1048 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 TBX21Q9UL17 535 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 SF3B1O75533 1304 aaKnown RBP eCLIP27.47■■□□□ 1.99
LDB1-202ENST00000425280 NT5C1B-RDH14C9J2C7 533 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 KCNN4O15554 427 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 PBX3P40426 434 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 ANKRD22Q5VYY1 191 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 ZNF280DQ6N043 979 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 BEND5Q7L4P6 421 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 TAC4Q86UU9 113 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 HOOK3Q86VS8 718 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms