RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GMPSP49915 693 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 KLC1Q07866 573 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 PRR5LQ6MZQ0 368 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 SLC30A9Q6PML9 568 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 PALB2Q86YC2 1186 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 DPY30Q9C005 99 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 GBA2Q9HCG7 927 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 HPS5Q9UPZ3 1129 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CITO14578 2027 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 SUPT7LO94864 414 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CCR1P32246 355 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 MARSP56192 900 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 LPIN1Q14693 890 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TYW3Q6IPR3 259 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 RETSATQ6NUM9 610 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CYB5R4Q7L1T6 521 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 DEFB128Q7Z7B8 93 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 IZUMO1Q8IYV9 350 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 GALNT4Q8N4A0 578 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 SUSD6Q92537 303 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 LRRC39Q96DD0 335 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 EFCAB1Q9HAE3 211 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 INTS13Q9NVM9 706 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 PRR12Q9ULL5 1215 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 AP3M1Q9Y2T2 418 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 USP15Q9Y4E8 981 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 FAM25AB3EWG3 89 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 FAM25CB3EWG5 89 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 FAM25GB3EWG6 89 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ZBTB39O15060 712 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 GLRA3O75311 464 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CPSF4O95639 269 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CXCR2P25025 360 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 NMT1P30419 496 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TUFMP49411 452 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 EFEMP1Q12805 493 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ADRM1Q16186 407 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 SMTNL2Q2TAL5 461 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 BHLHB9Q6PI77 547 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 C16orf86Q6ZW13 317 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CEP68Q76N32 757 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 EID3Q8N140 333 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TMEM132CQ8N3T6 1108 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 RP9Q8TA86 221 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 KCNV2Q8TDN2 545 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 MAML3Q96JK9 1138 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF512BQ96KM6 892 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 GAS2L1Q99501 681 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 REEP2Q9BRK0 252 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 NYAP2Q9P242 653 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 RPS6KL1Q9Y6S9 549 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 PDE2AO00408 941 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 KPNA5O15131 536 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 KLHL18O94889 574 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ANXA5P08758 320 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TCN1P20061 433 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 RCVRNP35243 200 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 GPR15P49685 360 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 LRRC14Q15048 493 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 LONP2Q86WA8 852 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 MIB1Q86YT6 1006 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ULK2Q8IYT8 1036 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TBC1D16Q8TBP0 767 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 E2F7Q96AV8 911 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 LRRC40Q9H9A6 602 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ALG13Q9NP73 1137 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 PAIP2BQ9ULR5 123 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ERVK-7P63135 1459 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TEX33O43247 280 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF682O95780 498 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 NDUFB10O96000 172 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CES1P23141 567 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 HTR1BP28222 390 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TAB1Q15750 504 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CHI3L2Q15782 390 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 MARK2Q7KZI7 788 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CHPFQ8IZ52 775 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 PROX1Q92786 737 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 MKNK1Q9BUB5 465 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 MARK1Q9P0L2 795 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ARHGAP28Q9P2N2 729 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ITGA11Q9UKX5 1188 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TRAV19A0A0A6YYK7 116 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TBKBP1A7MCY6 615 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CBX4O00257 560 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 SPTLC1O15269 473 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ICAM1P05362 532 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 SERPINF2P08697 491 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 AKR1B1P15121 316 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CCR4P51679 360 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 IKBKEQ14164 716 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TSC22D1Q15714 1073 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CBWD3Q5JTY5 395 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CBWD5Q5RIA9 395 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 SEL1L3Q68CR1 1132 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 FBXL19Q6PCT2 694 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 METTL3Q86U44 580 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ATG16L2Q8NAA4 619 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CELF1Q92879 486 aaKnown RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms