RNA–Protein interactions for RNA: ENST00000413899.1

HMGB1P11-201, Transcript of high mobility group box 1 pseudogene 11, humanhuman

BASIC

Gene HMGB1P11, Length 637 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P11-201ENST00000413899 SEMA3BQ13214 749 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 CSHL1Q14406 222 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 GRAMD1BQ3KR37 738 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 TUBB8Q3ZCM7 444 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 TRIM60Q495X7 471 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 TANGO2Q6ICL3 276 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 CCDC144NLQ6NUI1 221 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 ERAP2Q6P179 960 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 MSANTD2Q6P1R3 559 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 RD3Q7Z3Z2 195 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 FYTTD1Q96QD9 318 aaKnown RBP4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 CINPQ9BW66 212 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 SAP30LQ9HAJ7 183 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 PTPRHQ9HD43 1115 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 KCNK9Q9NPC2 374 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 SH3BP4Q9P0V3 963 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 C11orf21Q9P2W6 132 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 NFU1Q9UMS0 254 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 ZCCHC6Q5VYS8 1495 aaKnown RBP4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 SPATA31A1Q5TZJ5 1347 aa4.42□□□□□ -1.7
HMGB1P11-201ENST00000413899 POC1B-GALNT4F8VUJ3 575 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 ACKR2O00590 384 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 CA12O43570 354 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 EXOC3O60645 756 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 PRAMEF2O60811 474 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 TCEA3O75764 348 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 MBPP02686 304 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 DRD1P21728 446 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 MATN1P21941 496 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 TRAPPC10P48553 1259 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 COPB1P53618 953 aaKnown RBP4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 PROK1P58294 105 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 CCDC15Q0P6D6 951 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 GRM4Q14833 912 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 LARS2Q15031 903 aaKnown RBP4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 PDCD2Q16342 344 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 PROSER3Q2NL68 480 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 CCDC38Q502W7 563 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 GGT6Q6P531 493 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 PTF1AQ7RTS3 328 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 P3H2Q8IVL5 708 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 GALNT4Q8N4A0 578 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 ADAMTS18Q8TE60 1221 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 HASPINQ8TF76 798 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 WDR60Q8WVS4 1066 aa4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 RNF26Q9BY78 433 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P11-201ENST00000413899 LINC01548A6NM66 108 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 TNFRSF6BO95407 300 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 C1RP00736 705 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 ITGA2BP08514 1039 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 DUSP1P28562 367 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 CDK7P50613 346 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 JAK3P52333 1124 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 TRIM14Q14142 442 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 FAM187BQ17R55 369 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 ACSM6Q6P461 480 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 ZNF788Q6ZQV5 615 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 TRABD2AQ86V40 505 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 FAM71DQ8N9W8 422 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 ATG16L2Q8NAA4 619 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 SEMA6DQ8NFY4 1073 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 OR52L2PQ8NGH6 319 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 OR1N1Q8NGS0 311 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 MAFAQ8NHW3 353 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 STT3BQ8TCJ2 826 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 GLMPQ8WWB7 406 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 PRR11Q96HE9 360 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 RITA1Q96K30 269 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 CCDC17Q96LX7 622 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 EPS8L2Q9H6S3 715 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 AGO4Q9HCK5 861 aaKnown RBP4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 DACT1Q9NYF0 836 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 HERC5Q9UII4 1024 aaKnown RBP4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 SCAF8Q9UPN6 1271 aaKnown RBP4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 UBE2J1Q9Y385 318 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 SPATA31A6Q5VVP1 1343 aa4.4□□□□□ -1.71
HMGB1P11-201ENST00000413899 CCDC187A0A096LP49 1063 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 hCG_1642624A0A1W2PR95 340 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 FAM90A18PA6NE21 464 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 FAM90A16PA6NEW6 464 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 WIPF3A6NGB9 483 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 FAM90A9PA6NNJ1 464 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 FAM90A5PA8MXJ8 464 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 TISP43B9A030 160 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 UBE2Q2LH0YL09 131 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 M0QZQ0 153 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 DNPH1O43598 174 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 EIF3JO75822 258 aaKnown RBP4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 USP1O94782 785 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 PRKCGP05129 697 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 FAM90A15PP0C7V4 464 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 FAM90A14PP0C7W9 464 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 NHLRC4P0CG21 123 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 VEGFAP15692 232 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 YY1P25490 414 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 GALNSP34059 522 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 CHKAP35790 457 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 IGHMBP2P38935 993 aaKnown RBP4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 GRK6P43250 576 aa4.39□□□□□ -1.71
HMGB1P11-201ENST00000413899 PNLIPRP1P54315 467 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms