RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TMEM132CQ8N3T6 1108 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 SCAF8Q9UPN6 1271 aaKnown RBP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 OVOS2A0A0G2JMS6 1433 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 IL18RAPO95256 599 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 LSM8O95777 96 aaKnown RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 FDX1P10109 184 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 CSNK2BP67870 215 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 OR2W6PQ8NHA6 318 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 RAB2BQ8WUD1 216 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 GDF3Q9NR23 364 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 TMEM216Q9P0N5 145 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 MAGED2Q9UNF1 606 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 CLUHO75153 1309 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 A0A087WWV3 80 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 TPBGLP0DKB5 382 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 MYBL2P10244 700 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 NPR2P20594 1047 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 VAC14Q08AM6 782 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 C12orf66Q96MD2 445 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 RACGAP1Q9H0H5 632 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 NEK6Q9HC98 313 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 PRDM8Q9NQV8 689 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 ADPRHL2Q9NX46 363 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 KLHL28Q9NXS3 571 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 CSADQ9Y600 493 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 PDLIM1O00151 329 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 SERPINA1P01009 418 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 CYP2C8P10632 490 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 RARBP10826 455 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 EIF2AK2P19525 551 aaKnown RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 SMIM11AP58511 58 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 PLK2Q9NYY3 685 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 CYP2C9P11712 490 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 ITGA2P17301 1181 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 SP100P23497 879 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 F8A1P23610 371 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 CRABP2P29373 138 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 FXR1P51114 621 aaKnown RBP eCLIP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 ARHGEF6Q15052 776 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 FBXW8Q8N3Y1 598 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 TMEM237Q96Q45 408 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 RNF17Q9BXT8 1623 aaKnown RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 TFE3P19532 575 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 ITIH1P19827 911 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 NR2C2P49116 596 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 CDC42P60953 191 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 GNA13Q14344 377 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 POLD3Q15054 466 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 CCNG2Q16589 344 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 TMEM8AQ9HCN3 771 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 LATS2Q9NRM7 1088 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 GPN3Q9UHW5 284 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 PTGER2P43116 358 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 RBM12BQ8IXT5 1001 aaKnown RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 CABLES1Q8TDN4 633 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 LY9Q9HBG7 655 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 SARS2Q9NP81 518 aaKnown RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 COMTP21964 271 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 S100A12P80511 92 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 NFX1Q12986 1120 aaKnown RBP13.23□□□□□ -0.29
COL6A3-206ENST00000409809 STK32BQ9NY57 414 aa13.23□□□□□ -0.29
COL6A3-206ENST00000409809 AKAP8O43823 692 aaKnown RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 DNAJA2O60884 412 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SERPINA6P08185 405 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 ZNF806P0C7X5 589 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 NR4A1P22736 598 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SLC1A6P48664 564 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 DLGAP5Q15398 846 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 ANKRD40Q6AI12 368 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 PPP1R10Q96QC0 940 aaKnown RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 RIBC2Q9H4K1 309 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 TRNAU1APQ9NX07 287 aaKnown RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 INPP5FQ9Y2H2 1132 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 NDUFAF1Q9Y375 327 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 EYA4O95677 639 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 PPIL2Q13356 520 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SYTL3Q4VX76 610 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SPOUT1Q5T280 376 aaKnown RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 PDXDC2PQ6P474 469 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 CXXC5Q7LFL8 322 aaKnown RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 C12orf56Q8IXR9 622 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 ANKRD49Q8WVL7 239 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 PPP1R36Q96LQ0 422 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 ANAPC2Q9UJX6 822 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SORBS3O60504 671 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 AKR1B1P15121 316 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 TXNRD1Q16881 649 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 CLEC16AQ2KHT3 1053 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 TYW3Q6IPR3 259 aaKnown RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 ADCY4Q8NFM4 1077 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 NAT14Q8WUY8 206 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 RBAKQ9NYW8 714 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 DNAJB4Q9UDY4 337 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SNX7Q9UNH6 387 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SDC2P34741 201 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 CINPQ9BW66 212 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 ZCCHC11Q5TAX3 1644 aaKnown RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 H0YIN7 160 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 RIPK2O43353 540 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SLC2A3P11169 496 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms